View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1916_high_13 (Length: 358)
Name: NF1916_high_13
Description: NF1916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1916_high_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 9 - 342
Target Start/End: Original strand, 33160195 - 33160528
Alignment:
| Q |
9 |
agaccaatactaaagtcaagtcatgatctatatttctgaaaatgaccctttatttattttttggttcctcaactctagtgttggagacatatgattggag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33160195 |
agaccaatactaaagtcaagtcatgatctatatttctgaaaatgaccctttatttattttttggttcctcaactctagtgttggagacatatgattggag |
33160294 |
T |
|
| Q |
109 |
aattcatgttactagtttcaaattcatcatcaatcaatgacattattaatggaatcaacccatttgcttacaataggaaaatatgtcttgtgtttgttta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33160295 |
aattcatgttactagtttcaaattcatcatcaatcaatgacattattaatggaatcaacccatttgcttacaataggaaaatatgtcttgtgtttgttta |
33160394 |
T |
|
| Q |
209 |
tctctaaagaaaccaaaaagtaaaaacaaatcttcatcaccaagcaccttattcttacatgagtcaatttcaagtttcaattcatgtaaatagaacaata |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33160395 |
tctctaaagaaaccaaaaagtaaaaacaaatcttcatcaccaagcaccttattcttacatgagtcaatttcaagcttcaattcatgtaaatagaacaata |
33160494 |
T |
|
| Q |
309 |
acctttcaaaagggtgaatagactaattactatc |
342 |
Q |
| |
|
||| ||||||||||| ||||||| |||| ||||| |
|
|
| T |
33160495 |
acccttcaaaagggtaaatagaccaattgctatc |
33160528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University