View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1916_high_14 (Length: 349)

Name: NF1916_high_14
Description: NF1916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1916_high_14
NF1916_high_14
[»] chr6 (10 HSPs)
chr6 (1-331)||(4076324-4076686)
chr6 (1-106)||(4179143-4179250)
chr6 (2-56)||(13172572-13172627)
chr6 (1-55)||(11687142-11687197)
chr6 (1-55)||(29609000-29609055)
chr6 (1-50)||(11687260-11687310)
chr6 (1-50)||(20501710-20501760)
chr6 (1-50)||(20501823-20501872)
chr6 (1-56)||(15546630-15546686)
chr6 (1-56)||(21380058-21380114)
[»] chr8 (6 HSPs)
chr8 (1-43)||(38629486-38629528)
chr8 (2-42)||(37114356-37114396)
chr8 (2-55)||(38629592-38629646)
chr8 (2-42)||(4261989-4262029)
chr8 (1-56)||(29781076-29781132)
chr8 (2-50)||(38405257-38405305)
[»] chr4 (10 HSPs)
chr4 (2-55)||(35360794-35360847)
chr4 (1-56)||(20435257-20435313)
chr4 (1-55)||(3422546-3422601)
chr4 (2-56)||(21048703-21048758)
chr4 (1-56)||(35360675-35360730)
chr4 (2-56)||(42274490-42274545)
chr4 (1-50)||(42274610-42274660)
chr4 (3-55)||(16995673-16995726)
chr4 (2-50)||(24969545-24969594)
chr4 (1-56)||(52824237-52824293)
[»] chr3 (18 HSPs)
chr3 (2-50)||(404163-404211)
chr3 (2-56)||(25446368-25446422)
chr3 (1-56)||(4072391-4072447)
chr3 (1-56)||(12789604-12789660)
chr3 (1-41)||(32362875-32362915)
chr3 (1-56)||(36657550-36657606)
chr3 (1-55)||(36657432-36657487)
chr3 (1-55)||(37506243-37506298)
chr3 (1-55)||(38125296-38125351)
chr3 (1-55)||(25446250-25446303)
chr3 (1-50)||(26976959-26977009)
chr3 (2-50)||(12838195-12838244)
chr3 (2-50)||(32237398-32237447)
chr3 (1-56)||(1476668-1476724)
chr3 (1-56)||(35368547-35368603)
chr3 (1-41)||(36329297-36329337)
chr3 (1-56)||(39850342-39850398)
chr3 (1-56)||(45487797-45487853)
[»] chr1 (16 HSPs)
chr1 (1-56)||(51789712-51789768)
chr1 (1-56)||(28447990-28448046)
chr1 (1-56)||(36880287-36880343)
chr1 (1-56)||(47940688-47940744)
chr1 (1-56)||(50627248-50627304)
chr1 (1-55)||(4299512-4299567)
chr1 (1-55)||(36880628-36880683)
chr1 (1-55)||(50627130-50627185)
chr1 (1-50)||(14387132-14387182)
chr1 (1-50)||(27928415-27928465)
chr1 (1-56)||(46691210-46691267)
chr1 (1-56)||(5189467-5189523)
chr1 (2-42)||(5189587-5189627)
chr1 (1-41)||(21930394-21930434)
chr1 (3-50)||(25297966-25298014)
chr1 (1-56)||(49285092-49285148)
[»] chr2 (10 HSPs)
chr2 (1-55)||(34490455-34490510)
chr2 (2-50)||(2818784-2818833)
chr2 (1-50)||(29229481-29229530)
chr2 (1-50)||(29342781-29342830)
chr2 (2-50)||(17434799-17434847)
chr2 (1-55)||(1924098-1924153)
chr2 (1-55)||(22269839-22269894)
chr2 (1-56)||(16705731-16705787)
chr2 (1-56)||(37340964-37341020)
chr2 (1-56)||(45408623-45408679)
[»] chr7 (9 HSPs)
chr7 (1-50)||(39617959-39618008)
chr7 (1-55)||(38883220-38883275)
chr7 (1-55)||(33749643-33749697)
chr7 (1-50)||(38883338-38883388)
chr7 (1-42)||(38528403-38528444)
chr7 (2-42)||(30594811-30594851)
chr7 (1-56)||(31231733-31231789)
chr7 (2-50)||(31521530-31521578)
chr7 (1-56)||(38528529-38528585)
[»] chr5 (12 HSPs)
chr5 (1-56)||(10132280-10132336)
chr5 (1-56)||(15855841-15855897)
chr5 (1-56)||(20476429-20476485)
chr5 (1-56)||(35420610-35420666)
chr5 (1-56)||(35420729-35420785)
chr5 (1-55)||(16472954-16473009)
chr5 (1-50)||(15855960-15856010)
chr5 (1-50)||(16473072-16473122)
chr5 (2-50)||(32623219-32623268)
chr5 (1-42)||(33629464-33629505)
chr5 (1-56)||(4265980-4266036)
chr5 (2-42)||(4266100-4266140)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-56)||(72388-72443)
[»] scaffold0595 (1 HSPs)
scaffold0595 (1-42)||(5714-5755)


Alignment Details
Target: chr6 (Bit Score: 176; Significance: 9e-95; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 4076686 - 4076324
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgtactaagttttatccttnnnnnnnnnnnnn-tactatctaaaaatattagttactagaatt 99  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||              ||||||||| ||||||||||||||||||||    
T  4076686 ttttaattaagaaccatacgaaaaacatttaaagaattgtactaagttttatctttaaaaaaaaaaaaaatactatctacaaatattagttactagaatt 4076587  T
Q  100 ttcatatgaaaaccgacattggagtacgtatgcaattatatataa---------gtatcattgaacaagatgaagaaaaagttgagtaacatgataacaa 190  Q
    |||||||||||||||| ||| ||||||||||||||| |||||| |         ||||||||||||||||||||||||||||||||||||||||||||||    
T  4076586 ttcatatgaaaaccgagattagagtacgtatgcaataatatatcattaataatagtatcattgaacaagatgaagaaaaagttgagtaacatgataacaa 4076487  T
Q  191 cataagaacaaattgagtagcataaatcagaaccaaaataagaagaacaggaataaaaaccagtaccg---------------------tcgaccaa-ac 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     |||||||| ||    
T  4076486 cataagaacaaattgagtagcataaatcagaaccaaaataagaagaacaggaataaaaaccagtaccgtcgaagtggaaacagagggtgtcgaccaaaac 4076387  T
Q  269 acgatttcagcaaggagaaggttttgtgaattcagggttttcgaaacgcttttaaaggattat 331  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4076386 acgatttcagcaaggagaaggttttgtgaattcagggttttggaaacgcttttaaaggattat 4076324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 4179143 - 4179250
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgtactaagttttatcctt--nnnnnnnnnnnnntactatctaaaaatattagttactagaat 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||    
T  4179143 ttttagttaagaaccatacgaaaaacatttaaagaattgtactaagttttatccttaaaaaaaaaaaaaaatactatctaaaaatattagttactagaat 4179242  T
Q  99 tttcatat 106  Q
    ||||||||    
T  4179243 tttcatat 4179250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 13172627 - 13172572
Alignment:
Q  2 tttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    ||||||||||||||||||||||||||| || ||||||||| ||||||||| |||||    
T  13172627 tttagttaagaaccatacgaaaaacatctagagaattgtacctaagttttctcctt 13172572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 11687197 - 11687142
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcct 55  Q
    |||||||||||||||||||||||| ||| ||| |||||||| ||||||||| ||||    
T  11687197 ttttagttaagaaccatacgaaaagcatctaaggaattgtacctaagttttctcct 11687142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 29609055 - 29609000
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcct 55  Q
    |||||||||||||||| ||||||| || ||||||||||||| ||||||||| ||||    
T  29609055 ttttagttaagaaccacacgaaaagcacttaaagaattgtacctaagttttgtcct 29609000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 11687260 - 11687310
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagtttt 50  Q
    |||||||||||||||||||||||| ||| ||| |||||||| |||||||||    
T  11687260 ttttagttaagaaccatacgaaaagcatctaaggaattgtacctaagtttt 11687310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 20501760 - 20501710
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgt-actaagtttt 50  Q
    |||||||||||||||||||||||||||  ||| ||||||| ||||||||||    
T  20501760 ttttagttaagaaccatacgaaaaacacctaaggaattgtaactaagtttt 20501710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 20501823 - 20501872
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgtactaagtttt 50  Q
    |||||||||||||||||||||||| ||  |||  ||||||||||||||||    
T  20501823 ttttagttaagaaccatacgaaaagcacctaagaaattgtactaagtttt 20501872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 15546686 - 15546630
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    ||||||||||||||||||| |||||||  ||| |||||||| ||||||||| |||||    
T  15546686 ttttagttaagaaccatacaaaaaacaactaaggaattgtacctaagttttctcctt 15546630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 21380058 - 21380114
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    |||||||||||||||||||||||| ||  ||| |||||||| ||||||||| |||||    
T  21380058 ttttagttaagaaccatacgaaaagcacctaaggaattgtacctaagttttctcctt 21380114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 38629528 - 38629486
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgtact 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  38629528 ttttagttaagaaccatacgaaaagcatttaaagaattgtact 38629486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 37114356 - 37114396
Alignment:
Q  2 tttagttaagaaccatacgaaaaacatttaaagaattgtac 42  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  37114356 tttagttaagaaccatacaaaaaacatctaaagaattgtac 37114396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 38629592 - 38629646
Alignment:
Q  2 tttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcct 55  Q
    ||||||||||||||||||||||||||  ||| |||||||| ||||||||| ||||    
T  38629592 tttagttaagaaccatacgaaaaacacctaaggaattgtacctaagttttctcct 38629646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 4262029 - 4261989
Alignment:
Q  2 tttagttaagaaccatacgaaaaacatttaaagaattgtac 42  Q
    ||||||||||||||||||||||| ||  |||||||||||||    
T  4262029 tttagttaagaaccatacgaaaagcacctaaagaattgtac 4261989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 29781076 - 29781132
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    |||||||||||||||||||||||| ||| ||| |||||| | ||||||||| |||||    
T  29781076 ttttagttaagaaccatacgaaaagcatctaaggaattggacctaagttttctcctt 29781132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 38405257 - 38405305
Alignment:
Q  2 tttagttaagaaccatacgaaaaacatttaaagaattgtactaagtttt 50  Q
    |||||||||||||||||| |||||||  |||  ||||||||||||||||    
T  38405257 tttagttaagaaccatacaaaaaacacataagaaattgtactaagtttt 38405305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 35360794 - 35360847
Alignment:
Q  2 tttagttaagaaccatacgaaaaacatttaaagaattgtactaagttttatcct 55  Q
    ||||||||||||||||||||||||||  |||| |||||||||||||||| ||||    
T  35360794 tttagttaagaaccatacgaaaaacaactaaaaaattgtactaagttttctcct 35360847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 20435257 - 20435313
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    |||||||||||||||||||||||| ||  |||||||||||| ||||||||| |||||    
T  20435257 ttttagttaagaaccatacgaaaagcacctaaagaattgtacctaagttttctcctt 20435313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 3422546 - 3422601
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcct 55  Q
    |||||||||| ||||||||||||||||  |||||||||||| ||||||||| ||||    
T  3422546 ttttagttaaaaaccatacgaaaaacacctaaagaattgtacctaagttttgtcct 3422601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 21048758 - 21048703
Alignment:
Q  2 tttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    ||||||||||||||||||||||| ||| ||| |||||||| ||||||||| |||||    
T  21048758 tttagttaagaaccatacgaaaagcatctaacgaattgtacctaagttttctcctt 21048703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 35360730 - 35360675
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgtactaagttttatcctt 56  Q
    ||||||||||||||||||||||||| |  |||  |||||||||||||||| |||||    
T  35360730 ttttagttaagaaccatacgaaaaatacctaataaattgtactaagttttctcctt 35360675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 42274545 - 42274490
Alignment:
Q  2 tttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    ||||||||||||||||||||||| ||| ||| |||||||| ||||||||| |||||    
T  42274545 tttagttaagaaccatacgaaaagcatctaaggaattgtacctaagttttctcctt 42274490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 42274610 - 42274660
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagtttt 50  Q
    |||||||||||||||||||||||||||  ||| |||||||| |||||||||    
T  42274610 ttttagttaagaaccatacgaaaaacacctaaggaattgtacctaagtttt 42274660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 16995673 - 16995726
Alignment:
Q  3 ttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcct 55  Q
    |||||||| ||||||||||||| || ||||||||||||| ||||||||| ||||    
T  16995673 ttagttaaaaaccatacgaaaatcacttaaagaattgtatctaagttttgtcct 16995726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 24969594 - 24969545
Alignment:
Q  2 tttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagtttt 50  Q
    ||||||||||||||||||||||| ||  |||||||||||| |||||||||    
T  24969594 tttagttaagaaccatacgaaaagcacctaaagaattgtacctaagtttt 24969545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 52824293 - 52824237
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    |||||||||||||||||||||||| ||  ||| |||||||| ||||||||| |||||    
T  52824293 ttttagttaagaaccatacgaaaagcacctaaggaattgtacctaagttttctcctt 52824237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 404163 - 404211
Alignment:
Q  2 tttagttaagaaccatacgaaaaacatttaaagaattgtactaagtttt 50  Q
    ||||||||||||||||||| ||| ||| |||||||||||||||||||||    
T  404163 tttagttaagaaccatacggaaagcatctaaagaattgtactaagtttt 404211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 25446368 - 25446422
Alignment:
Q  2 tttagttaagaaccatacgaaaaacatttaaagaattgtactaagttttatcctt 56  Q
    ||||||||||||||||||||||| ||  ||| ||||||||||||||||| |||||    
T  25446368 tttagttaagaaccatacgaaaagcacctaaggaattgtactaagttttctcctt 25446422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 4072391 - 4072447
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    |||||||||||||||||||||||||||  ||| |||||||| ||||||||| |||||    
T  4072391 ttttagttaagaaccatacgaaaaacacctaaggaattgtacctaagttttctcctt 4072447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 12789660 - 12789604
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    |||||||||||||||||||||||||||  ||| |||||||| ||||||||| |||||    
T  12789660 ttttagttaagaaccatacgaaaaacacctaaggaattgtacctaagttttctcctt 12789604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 32362915 - 32362875
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta 41  Q
    |||||||||||||||||||||||||||  ||||||||||||    
T  32362915 ttttagttaagaaccatacgaaaaacacctaaagaattgta 32362875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 36657550 - 36657606
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    |||||||||||||||||||||||| ||| ||| |||||||| ||||||||| |||||    
T  36657550 ttttagttaagaaccatacgaaaagcatctaaggaattgtacctaagttttctcctt 36657606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 36657487 - 36657432
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcct 55  Q
    |||||||||||||||||||||||| ||| ||| |||||||| ||||||||| ||||    
T  36657487 ttttagttaagaaccatacgaaaagcatctaaggaattgtacctaagttttctcct 36657432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 37506243 - 37506298
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgtac-taagttttatcct 55  Q
    |||||||||||||||| ||||||||||  ||||||||||||| |||||||| ||||    
T  37506243 ttttagttaagaaccacacgaaaaacacctaaagaattgtacataagttttgtcct 37506298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 38125296 - 38125351
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcct 55  Q
    |||||||||||||||||||||||||||  ||| |||||||| ||||||||| ||||    
T  38125296 ttttagttaagaaccatacgaaaaacacctaatgaattgtacctaagttttctcct 38125351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 25446303 - 25446250
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgtactaagttttatcct 55  Q
    |||||||||||||||||||||||| ||  ||| ||||||||||||||||| ||||    
T  25446303 ttttagttaagaaccatacgaaaagca-ctaaggaattgtactaagttttctcct 25446250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 26976959 - 26977009
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagtttt 50  Q
    |||||||||| ||||||||||||||||  |||||||||||| |||||||||    
T  26976959 ttttagttaaaaaccatacgaaaaacacctaaagaattgtacctaagtttt 26977009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 12838195 - 12838244
Alignment:
Q  2 tttagttaagaaccatacgaaaaacatttaaagaattgtac-taagtttt 50  Q
    ||||||||| ||||||||||||||||  ||||||||||||| ||||||||    
T  12838195 tttagttaaaaaccatacgaaaaacacctaaagaattgtacataagtttt 12838244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 32237447 - 32237398
Alignment:
Q  2 tttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagtttt 50  Q
    ||||||||||||||||||||||||||  ||| |||||||| |||||||||    
T  32237447 tttagttaagaaccatacgaaaaacacctaaggaattgtacctaagtttt 32237398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 1476668 - 1476724
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    |||||||||||||||||| ||||| ||  ||| |||||||| |||||||||||||||    
T  1476668 ttttagttaagaaccatatgaaaagcacctaaggaattgtacctaagttttatcctt 1476724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 35368603 - 35368547
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    |||||||||||||||||||||||| ||  ||| |||||||| ||||||||| |||||    
T  35368603 ttttagttaagaaccatacgaaaagcacataaggaattgtacctaagttttctcctt 35368547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 36329297 - 36329337
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta 41  Q
    |||||||||||||||||||||||| ||  ||||||||||||    
T  36329297 ttttagttaagaaccatacgaaaagcacctaaagaattgta 36329337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 39850398 - 39850342
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    |||||||||||||||||||||||||||  ||| |||| ||| ||||||||| |||||    
T  39850398 ttttagttaagaaccatacgaaaaacacctaaggaatagtacctaagttttctcctt 39850342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 45487853 - 45487797
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    |||||||||||||||||||||||| ||  ||| |||||||| ||||||||| |||||    
T  45487853 ttttagttaagaaccatacgaaaagcacctaaggaattgtacctaagttttctcctt 45487797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 51789712 - 51789768
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    |||||||||||||||||||||||| ||||||| |||||||| ||||||||| |||||    
T  51789712 ttttagttaagaaccatacgaaaagcatttaaggaattgtacctaagttttctcctt 51789768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 28447990 - 28448046
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    ||||||||| |||| | ||||||||||| |||||||||||| |||||||||||||||    
T  28447990 ttttagttatgaactaaacgaaaaacatataaagaattgtacctaagttttatcctt 28448046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 36880343 - 36880287
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    ||||||||| ||||||||||||||||| ||||| ||||||| ||||||||| |||||    
T  36880343 ttttagttaggaaccatacgaaaaacacttaaaaaattgtacctaagttttctcctt 36880287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 47940688 - 47940744
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    |||||||||||||||||||||||||||  ||| |||||||| ||||||||| |||||    
T  47940688 ttttagttaagaaccatacgaaaaacacctaaggaattgtacctaagttttctcctt 47940744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 50627248 - 50627304
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    |||||||||||||||||||||||| ||| ||| |||||||| ||||||||| |||||    
T  50627248 ttttagttaagaaccatacgaaaagcatataaggaattgtacctaagttttctcctt 50627304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 4299512 - 4299567
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcct 55  Q
    |||||||||||||||||||||||||||  ||| |||||||| ||||||||| ||||    
T  4299512 ttttagttaagaaccatacgaaaaacacctaaggaattgtacctaagttttctcct 4299567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 36880628 - 36880683
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcct 55  Q
    |||||||||||||||||||||||| ||| ||| |||||||| ||||||||| ||||    
T  36880628 ttttagttaagaaccatacgaaaagcatctaaggaattgtacctaagttttctcct 36880683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 50627185 - 50627130
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcct 55  Q
    |||||||||||||||||||||||| ||| ||| |||||||| ||||||||| ||||    
T  50627185 ttttagttaagaaccatacgaaaagcatctaaggaattgtacctaagttttctcct 50627130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 14387132 - 14387182
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagtttt 50  Q
    |||||||||||||||||||||||||||  ||| |||||||| |||||||||    
T  14387132 ttttagttaagaaccatacgaaaaacacctaaggaattgtacctaagtttt 14387182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 27928415 - 27928465
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgtac-taagtttt 50  Q
    |||||||||||||||||||||||||||  ||| ||||||||| ||||||||    
T  27928415 ttttagttaagaaccatacgaaaaacacctaaggaattgtacataagtttt 27928465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 46691210 - 46691267
Alignment:
Q  1 ttttagttaagaaccatac-gaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    |||||||||| |||||||| ||||||||| |||||||||||| ||||||||| |||||    
T  46691210 ttttagttaaaaaccatacagaaaaacatctaaagaattgtacctaagttttgtcctt 46691267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 5189523 - 5189467
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    |||||||||||||||||||||||| ||  ||| |||||||| ||||||||| |||||    
T  5189523 ttttagttaagaaccatacgaaaagcacctaaggaattgtacctaagttttctcctt 5189467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 5189587 - 5189627
Alignment:
Q  2 tttagttaagaaccatacgaaaaacatttaaagaattgtac 42  Q
    ||||||||||||||||||||||| ||| ||| |||||||||    
T  5189587 tttagttaagaaccatacgaaaagcatctaaggaattgtac 5189627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 21930434 - 21930394
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta 41  Q
    |||||||||||||||||||||||||||  ||| ||||||||    
T  21930434 ttttagttaagaaccatacgaaaaacaactaaggaattgta 21930394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 25297966 - 25298014
Alignment:
Q  3 ttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagtttt 50  Q
    |||||||||||||||||||||||||  ||| |||||||| |||||||||    
T  25297966 ttagttaagaaccatacgaaaaacacctaaggaattgtacctaagtttt 25298014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 49285092 - 49285148
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    |||||||||||||||||||||||| ||  ||| |||||||| ||||||||| |||||    
T  49285092 ttttagttaagaaccatacgaaaagcacctaaggaattgtacctaagttttctcctt 49285148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 34490510 - 34490455
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcct 55  Q
    |||||||||||||||||||||||||||  |||||||||||| ||||||||| ||||    
T  34490510 ttttagttaagaaccatacgaaaaacacctaaagaattgtacctaagttttctcct 34490455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 2818784 - 2818833
Alignment:
Q  2 tttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagtttt 50  Q
    ||||||||||||||||||||||||||  |||||||||||| |||||||||    
T  2818784 tttagttaagaaccatacgaaaaacacctaaagaattgtacctaagtttt 2818833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 29229481 - 29229530
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgtactaagtttt 50  Q
    ||||||||||||||||||||||||  |  |||||||||||||||||||||    
T  29229481 ttttagttaagaaccatacgaaaagtaactaaagaattgtactaagtttt 29229530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 29342781 - 29342830
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgtactaagtttt 50  Q
    ||||||||||||||||||||||||  |  |||||||||||||||||||||    
T  29342781 ttttagttaagaaccatacgaaaagtaactaaagaattgtactaagtttt 29342830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 17434799 - 17434847
Alignment:
Q  2 tttagttaagaaccatacgaaaaacatttaaagaattgtactaagtttt 50  Q
    |||||||||||| |||||||||||||| ||| ||||||||| |||||||    
T  17434799 tttagttaagaatcatacgaaaaacatctaaggaattgtaccaagtttt 17434847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 1924098 - 1924153
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcct 55  Q
    |||||||||||||||||||||||||||  ||| |||||||| ||||||||| ||||    
T  1924098 ttttagttaagaaccatacgaaaaacacctaaggaattgtacctaagttttctcct 1924153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 22269839 - 22269894
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgtac-taagttttatcct 55  Q
    |||||||||||||||||||||||| ||| ||| ||||||||| |||||||| ||||    
T  22269839 ttttagttaagaaccatacgaaaagcatctaaggaattgtacgtaagttttctcct 22269894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 16705787 - 16705731
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    |||||||||||||||||||||||| ||  ||| |||||||| ||||||||| |||||    
T  16705787 ttttagttaagaaccatacgaaaagcacctaaggaattgtacctaagttttctcctt 16705731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 37341020 - 37340964
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    ||||||||||||||||||| ||||| | ||||| ||||||| ||||||||| |||||    
T  37341020 ttttagttaagaaccatacaaaaaatacttaaaaaattgtacctaagttttgtcctt 37340964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 45408679 - 45408623
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    ||||||||||||||||||| |||||||  ||| |||||||| ||||||||| |||||    
T  45408679 ttttagttaagaaccatacaaaaaacacctaaggaattgtacctaagttttctcctt 45408623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 39617959 - 39618008
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgtactaagtttt 50  Q
    |||||||||||||| ||||||||| ||  |||||||||||||||||||||    
T  39617959 ttttagttaagaactatacgaaaagcacctaaagaattgtactaagtttt 39618008  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 38883275 - 38883220
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcct 55  Q
    |||||||||||||||||||||||| ||| ||| |||||||| ||||||||| ||||    
T  38883275 ttttagttaagaaccatacgaaaagcatctaaggaattgtacctaagttttctcct 38883220  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 33749697 - 33749643
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgtactaagttttatcct 55  Q
    ||||||||||||| ||||||||||| |  ||||||||| ||||||||||| ||||    
T  33749697 ttttagttaagaatcatacgaaaaatacctaaagaattatactaagttttgtcct 33749643  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 38883338 - 38883388
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagtttt 50  Q
    |||||||||||||||||||||||| ||| ||| |||||||| |||||||||    
T  38883338 ttttagttaagaaccatacgaaaagcatctaaggaattgtacctaagtttt 38883388  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 38528444 - 38528403
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgtac 42  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  38528444 ttttagttaagaaccatacaaaaagcatttaaggaattgtac 38528403  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 30594811 - 30594851
Alignment:
Q  2 tttagttaagaaccatacgaaaaacatttaaagaattgtac 42  Q
    ||||||||||||||||||||||| ||| ||| |||||||||    
T  30594811 tttagttaagaaccatacgaaaagcatctaaggaattgtac 30594851  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 31231733 - 31231789
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    |||||||||||||||||||||||| ||  ||| |||||||| ||||||||| |||||    
T  31231733 ttttagttaagaaccatacgaaaagcacctaaggaattgtacctaagttttctcctt 31231789  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 31521578 - 31521530
Alignment:
Q  2 tttagttaagaaccatacgaaaaacatttaaagaattgtactaagtttt 50  Q
    ||||||||||||||||||||||| ||| |||  ||||||||||| ||||    
T  31521578 tttagttaagaaccatacgaaaagcatctaagaaattgtactaaatttt 31521530  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 38528529 - 38528585
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    |||||||||||||||||||||||| ||  ||| |||||||| ||||||||| |||||    
T  38528529 ttttagttaagaaccatacgaaaagcacctaaggaattgtacctaagttttctcctt 38528585  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 10132336 - 10132280
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    ||||| ||||||||||||| |||||||| |||| ||||||| |||||||||||||||    
T  10132336 ttttaattaagaaccatacaaaaaacatataaaaaattgtatctaagttttatcctt 10132280  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 15855897 - 15855841
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    |||||||||||||||||||||||| ||| ||| |||||||| ||||||||| |||||    
T  15855897 ttttagttaagaaccatacgaaaagcatctaaggaattgtacctaagttttctcctt 15855841  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 20476485 - 20476429
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    |||||||||||||||||||||||| ||| || ||||||||| ||||||||| |||||    
T  20476485 ttttagttaagaaccatacgaaaagcatctagagaattgtacctaagttttctcctt 20476429  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 35420666 - 35420610
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    |||||||||||||||||||||||| ||| ||| |||||||| ||||||||| |||||    
T  35420666 ttttagttaagaaccatacgaaaagcatctaaggaattgtacctaagttttctcctt 35420610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 35420729 - 35420785
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    |||||||||||||||||||||||| ||| ||| |||||||| ||||||||| |||||    
T  35420729 ttttagttaagaaccatacgaaaagcatctaaggaattgtacctaagttttctcctt 35420785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 16473009 - 16472954
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcct 55  Q
    |||||||||||||||||||||||| ||| ||| |||||||| ||||||||| ||||    
T  16473009 ttttagttaagaaccatacgaaaagcatctaaggaattgtacctaagttttttcct 16472954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 15855960 - 15856010
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagtttt 50  Q
    |||||||||||||||||||||||| ||| ||| |||||||| |||||||||    
T  15855960 ttttagttaagaaccatacgaaaagcatctaaggaattgtacctaagtttt 15856010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 16473072 - 16473122
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagtttt 50  Q
    |||||||||||||||||||||||| ||| ||| |||||||| |||||||||    
T  16473072 ttttagttaagaaccatacgaaaagcatctaaggaattgtacctaagtttt 16473122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 32623268 - 32623219
Alignment:
Q  2 tttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagtttt 50  Q
    ||||||||||||||||||||||||||  ||| |||||||| |||||||||    
T  32623268 tttagttaagaaccatacgaaaaacacctaaggaattgtacctaagtttt 32623219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 33629464 - 33629505
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgtac 42  Q
    ||||||||||||| |||||||||||||| ||| |||||||||    
T  33629464 ttttagttaagaatcatacgaaaaacatctaaggaattgtac 33629505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 4266036 - 4265980
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgta-ctaagttttatcctt 56  Q
    |||||||||||||||||||||||||||  |||  ||||||| ||||||||| |||||    
T  4266036 ttttagttaagaaccatacgaaaaacacctaagaaattgtacctaagttttctcctt 4265980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 4266100 - 4266140
Alignment:
Q  2 tttagttaagaaccatacgaaaaacatttaaagaattgtac 42  Q
    ||||||||||||||||||||||||||  ||| |||||||||    
T  4266100 tttagttaagaaccatacgaaaaacacctaaggaattgtac 4266140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 72388 - 72443
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgtactaagttttatcctt 56  Q
    |||||||||| ||||||||||||| || |||| |||||| |||||||||| |||||    
T  72388 ttttagttaaaaaccatacgaaaagcacttaaggaattgcactaagttttctcctt 72443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0595 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 5755 - 5714
Alignment:
Q  1 ttttagttaagaaccatacgaaaaacatttaaagaattgtac 42  Q
    |||||||||||||||||||||||| ||  |||||||||||||    
T  5755 ttttagttaagaaccatacgaaaagcacctaaagaattgtac 5714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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