View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1916_high_15 (Length: 297)

Name: NF1916_high_15
Description: NF1916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1916_high_15
NF1916_high_15
[»] chr8 (21 HSPs)
chr8 (13-139)||(28069712-28069838)
chr8 (19-141)||(36991355-36991477)
chr8 (17-139)||(30426625-30426747)
chr8 (13-136)||(44859128-44859249)
chr8 (17-139)||(10672470-10672590)
chr8 (17-139)||(40695204-40695325)
chr8 (18-139)||(10652573-10652694)
chr8 (17-131)||(41511259-41511373)
chr8 (78-139)||(5033310-5033371)
chr8 (17-68)||(28318929-28318980)
chr8 (13-139)||(45113263-45113390)
chr8 (13-69)||(24102009-24102065)
chr8 (17-62)||(26749581-26749626)
chr8 (17-65)||(1937185-1937233)
chr8 (18-65)||(34612562-34612609)
chr8 (81-139)||(37966400-37966457)
chr8 (13-46)||(12177613-12177646)
chr8 (13-46)||(12422041-12422074)
chr8 (28-65)||(17867690-17867727)
chr8 (78-134)||(6014253-6014309)
chr8 (103-139)||(8412698-8412734)
[»] chr7 (31 HSPs)
chr7 (13-139)||(9559010-9559136)
chr7 (16-139)||(4888463-4888586)
chr7 (17-139)||(16366515-16366637)
chr7 (17-139)||(21151149-21151271)
chr7 (17-139)||(44647959-44648083)
chr7 (17-139)||(7362565-7362686)
chr7 (13-139)||(18198249-18198375)
chr7 (17-138)||(45260384-45260505)
chr7 (17-139)||(12139323-12139446)
chr7 (17-136)||(47226035-47226152)
chr7 (13-96)||(25084727-25084810)
chr7 (13-139)||(33450499-33450626)
chr7 (174-276)||(21195723-21195821)
chr7 (174-276)||(21200974-21201072)
chr7 (13-139)||(47500238-47500365)
chr7 (13-131)||(989122-989239)
chr7 (17-139)||(39855770-39855891)
chr7 (78-136)||(47271107-47271164)
chr7 (17-62)||(47799933-47799978)
chr7 (17-61)||(30588532-30588576)
chr7 (13-140)||(34985900-34986028)
chr7 (34-69)||(46802357-46802392)
chr7 (13-59)||(11828945-11828991)
chr7 (28-66)||(19027713-19027751)
chr7 (17-63)||(19889066-19889112)
chr7 (28-66)||(20726885-20726923)
chr7 (13-63)||(32915949-32915999)
chr7 (13-63)||(32916162-32916212)
chr7 (28-65)||(4269187-4269224)
chr7 (28-65)||(14696788-14696825)
chr7 (28-65)||(30102501-30102538)
[»] chr6 (21 HSPs)
chr6 (17-139)||(4804445-4804567)
chr6 (13-140)||(13089704-13089831)
chr6 (17-139)||(7162081-7162203)
chr6 (17-139)||(12412634-12412756)
chr6 (17-139)||(21159325-21159447)
chr6 (17-138)||(1249105-1249224)
chr6 (13-136)||(27826531-27826654)
chr6 (17-139)||(17944159-17944281)
chr6 (29-136)||(227522-227630)
chr6 (28-131)||(7215816-7215919)
chr6 (78-139)||(32737915-32737976)
chr6 (17-69)||(29698160-29698212)
chr6 (29-132)||(2800574-2800677)
chr6 (17-65)||(24484876-24484924)
chr6 (13-58)||(2720366-2720411)
chr6 (78-141)||(30460882-30460944)
chr6 (82-140)||(1516162-1516219)
chr6 (82-140)||(1518251-1518308)
chr6 (28-65)||(7098226-7098263)
chr6 (106-138)||(3177061-3177093)
chr6 (13-65)||(32254061-32254113)
[»] chr5 (20 HSPs)
chr5 (13-139)||(18625377-18625503)
chr5 (17-142)||(35660562-35660687)
chr5 (17-139)||(32129573-32129695)
chr5 (13-139)||(13032111-13032237)
chr5 (17-139)||(37266728-37266850)
chr5 (17-139)||(39902412-39902534)
chr5 (17-136)||(11775790-11775909)
chr5 (17-131)||(4895699-4895813)
chr5 (17-139)||(14349800-14349922)
chr5 (17-139)||(34827189-34827311)
chr5 (17-139)||(40753118-40753240)
chr5 (28-146)||(29341003-29341120)
chr5 (17-69)||(4592797-4592849)
chr5 (17-123)||(8440943-8441049)
chr5 (28-137)||(43309116-43309225)
chr5 (13-65)||(3041338-3041390)
chr5 (17-65)||(36290599-36290647)
chr5 (17-63)||(28142807-28142853)
chr5 (13-58)||(2984427-2984472)
chr5 (28-65)||(40162737-40162774)
[»] chr2 (19 HSPs)
chr2 (13-136)||(13238674-13238797)
chr2 (17-141)||(35316822-35316946)
chr2 (17-140)||(28564889-28565012)
chr2 (17-139)||(23259443-23259565)
chr2 (78-141)||(45625033-45625096)
chr2 (78-141)||(11864927-11864990)
chr2 (28-139)||(2063361-2063472)
chr2 (13-60)||(8988848-8988895)
chr2 (17-131)||(4446860-4446974)
chr2 (98-136)||(32009934-32009972)
chr2 (17-65)||(374990-375038)
chr2 (81-133)||(40640731-40640783)
chr2 (28-62)||(30709118-30709152)
chr2 (28-65)||(13780506-13780543)
chr2 (28-65)||(40254180-40254217)
chr2 (17-69)||(21454520-21454572)
chr2 (17-61)||(23459880-23459924)
chr2 (17-65)||(29188650-29188698)
chr2 (107-139)||(32444384-32444416)
[»] chr4 (37 HSPs)
chr4 (17-139)||(19901874-19901996)
chr4 (17-139)||(56558276-56558398)
chr4 (17-139)||(5416422-5416543)
chr4 (7-140)||(33247085-33247218)
chr4 (17-139)||(3952126-3952248)
chr4 (17-139)||(5763118-5763240)
chr4 (17-139)||(18206996-18207118)
chr4 (17-139)||(23610639-23610761)
chr4 (17-138)||(34778418-34778539)
chr4 (10-140)||(12312430-12312561)
chr4 (21-139)||(24073617-24073735)
chr4 (17-139)||(38079676-38079798)
chr4 (17-127)||(30567898-30568008)
chr4 (17-141)||(33262506-33262630)
chr4 (78-141)||(12153212-12153275)
chr4 (17-140)||(39862514-39862637)
chr4 (79-139)||(33524321-33524381)
chr4 (79-139)||(52018822-52018882)
chr4 (13-132)||(1871270-1871388)
chr4 (17-63)||(12241440-12241486)
chr4 (17-69)||(31862246-31862298)
chr4 (32-134)||(47922327-47922430)
chr4 (18-65)||(56269106-56269153)
chr4 (13-69)||(47922101-47922157)
chr4 (17-65)||(5524444-5524492)
chr4 (17-65)||(48084555-48084603)
chr4 (29-141)||(56453775-56453886)
chr4 (28-65)||(25219003-25219040)
chr4 (28-65)||(32146510-32146547)
chr4 (28-65)||(46238974-46239011)
chr4 (103-132)||(49811509-49811538)
chr4 (28-65)||(53526096-53526133)
chr4 (28-65)||(55160401-55160438)
chr4 (78-134)||(36532683-36532738)
chr4 (23-59)||(36688224-36688260)
chr4 (17-65)||(37002281-37002329)
chr4 (17-61)||(42010114-42010158)
[»] chr3 (18 HSPs)
chr3 (13-139)||(43719903-43720029)
chr3 (17-139)||(27033648-27033770)
chr3 (17-139)||(19830387-19830509)
chr3 (36-140)||(24754673-24754777)
chr3 (36-140)||(24763670-24763774)
chr3 (17-139)||(2229980-2230102)
chr3 (17-139)||(34373828-34373950)
chr3 (28-137)||(40851782-40851891)
chr3 (17-136)||(46167390-46167509)
chr3 (13-141)||(48084812-48084941)
chr3 (17-69)||(34373611-34373663)
chr3 (87-139)||(24647905-24647957)
chr3 (17-115)||(12402963-12403061)
chr3 (13-69)||(40810382-40810438)
chr3 (17-65)||(42613077-42613125)
chr3 (17-69)||(550842-550894)
chr3 (17-65)||(31523698-31523746)
chr3 (17-61)||(49679304-49679348)
[»] chr1 (21 HSPs)
chr1 (13-139)||(50294019-50294145)
chr1 (13-139)||(48327110-48327235)
chr1 (17-139)||(50484383-50484505)
chr1 (17-140)||(12151764-12151887)
chr1 (17-141)||(40328275-40328396)
chr1 (13-139)||(23861908-23862037)
chr1 (78-139)||(12380833-12380894)
chr1 (78-139)||(12384900-12384961)
chr1 (13-69)||(24977233-24977289)
chr1 (79-139)||(45978064-45978124)
chr1 (17-127)||(39426207-39426317)
chr1 (35-139)||(7840635-7840739)
chr1 (17-69)||(12380936-12380988)
chr1 (17-69)||(12385003-12385055)
chr1 (13-141)||(18976258-18976386)
chr1 (17-63)||(46608409-46608455)
chr1 (17-65)||(52280069-52280117)
chr1 (13-58)||(5047418-5047463)
chr1 (28-65)||(6948862-6948899)
chr1 (78-142)||(1228493-1228557)
chr1 (23-67)||(24413310-24413354)
[»] scaffold0012 (1 HSPs)
scaffold0012 (17-139)||(208060-208182)
[»] scaffold0035 (1 HSPs)
scaffold0035 (13-139)||(16353-16479)
[»] scaffold0008 (1 HSPs)
scaffold0008 (20-139)||(9157-9276)
[»] scaffold0250 (1 HSPs)
scaffold0250 (13-140)||(7140-7271)
[»] scaffold0456 (1 HSPs)
scaffold0456 (78-139)||(13738-13799)
[»] scaffold0006 (1 HSPs)
scaffold0006 (78-135)||(73817-73874)
[»] scaffold0171 (1 HSPs)
scaffold0171 (17-62)||(17339-17384)
[»] scaffold0009 (1 HSPs)
scaffold0009 (17-134)||(6396-6513)
[»] scaffold0664 (1 HSPs)
scaffold0664 (28-65)||(4731-4768)


Alignment Details
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 28069712 - 28069838
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttat 112  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||        |||| ||||||||||||||| ||||||||||||||    
T  28069712 aaaataaaatataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctttctctctccaacttgcaaatctccatttat 28069811  T
Q  113 tttgtcaaatggagaggatcttcaccc 139  Q
    |||| ||||||||||||||||||||||    
T  28069812 tttgccaaatggagaggatcttcaccc 28069838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 36991355 - 36991477
Alignment:
Q  19 aaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttgtc 118  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||        |||||||||||||||||||| ||| |||||||||||||| |    
T  36991355 aaatataattaatgatggtgggacccacttagtggtaggacccatcatctatttcttatgtctatctctctccaacttgcaaaactccatttattttgcc 36991454  T
Q  119 aaatggagaggatcttcacccgt 141  Q
    |||||||||||||||||||||||    
T  36991455 aaatggagaggatcttcacccgt 36991477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 30426747 - 30426625
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||| ||| | ||||||||||||    
T  30426747 taaaatataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaaacaccatttattttg 30426648  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
     |||||||||||| |||||||||    
T  30426647 ccaaatggagagggtcttcaccc 30426625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 44859249 - 44859128
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttat 112  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||        ||||||||||||| |||||| ||| ||||||||||    
T  44859249 aaaataaaatataattaatgatggtgggacccacttagtggtagaacccaccatcta--tttttagtctatctctctctaacttgcaaaactccatttat 44859152  T
Q  113 tttgtcaaatggagaggatcttca 136  Q
    |||||||||| |||||||||||||    
T  44859151 tttgtcaaatagagaggatcttca 44859128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 10672590 - 10672470
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| ||||||||||||||| ||||||||||||||| ||||||||||        |||||  ||||||||||||| ||| ||||||||||||||    
T  10672590 taaaatataattaatgatggtgggactcacttagtggtaggatccaccatctattttttgtgtcta--tctctccaacttgcaaaactccatttattttg 10672493  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
     ||||||||||| ||||||||||    
T  10672492 ccaaatggagagaatcttcaccc 10672470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 40695325 - 40695204
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    ||||||||||||||||||||||| || ||||||||||||||||| ||||||||        |||||||||||||||||||  ||| ||||||||||||||    
T  40695325 taaaatataactaatgatggtggaactcacttagtggtaggacctaccatctattttttgtgtctatctctctccaacttccaaa-ctccatttattttg 40695227  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
      ||||||||| |||||||||||    
T  40695226 ctaaatggagaagatcttcaccc 40695204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 10652694 - 10652573
Alignment:
Q  18 aaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttgt 117  Q
    ||||||||| |||||||||||||||||| ||||| ||| ||||||||||| |         ||||||||||||||||||| ||| | |||||||||||      
T  10652694 aaaatataattaatgatggtgggacccaattagtagtatgacccaccatcaattttttgtatctatctctctccaacttgcaaaacaccatttattttac 10652595  T
Q  118 caaatggagaggatcttcaccc 139  Q
    ||||||||||||||||||||||    
T  10652594 caaatggagaggatcttcaccc 10652573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 41511259 - 41511373
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| |||||||||||| | |||||||||| |||||||||| |||||         ||||||||| ||||||||| ||| ||||||||||||||    
T  41511259 taaaatataattaatgatggtggaaaccacttagtgataggacccactatctattttttatatctatctctttccaacttgcaaaactccatttattttg 41511358  T
Q  117 tcaaatggagaggat 131  Q
    | ||| |||||||||    
T  41511359 ttaaacggagaggat 41511373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 5033310 - 5033371
Alignment:
Q  78 gtctatctctctccaacttgtaaatctccatttattttgtcaaatggagaggatcttcaccc 139  Q
    |||||||||||||||||||| ||| |||||||||||||| |||||||| |||||||||||||    
T  5033310 gtctatctctctccaacttgcaaaactccatttattttgccaaatggaaaggatcttcaccc 5033371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 28318980 - 28318929
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatct 68  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||| ||||    
T  28318980 taaaatataattaatgatggttggacccacttagtggtaggacccactatct 28318929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 45113263 - 45113390
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacccaccatcta-nnnnnnnngtctatctctctccaacttgtaaatctccattta 111  Q
    ||||||||| |||| |||||||| |||||| ||||||||||| ||||||||||||||         |||||| ||||||||| ||| ||| | | |||||    
T  45113263 aaaataaaaaataattaatgatgatgggacacacttagtggttggacccaccatctattcttttgtgtctatgtctctccaaattgcaaaacacaattta 45113362  T
Q  112 ttttgtcaaatggagaggatcttcaccc 139  Q
    ||||  ||||||||||||||||| ||||    
T  45113363 ttttagcaaatggagaggatcttaaccc 45113390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 24102009 - 24102065
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacccaccatcta 69  Q
    ||||| |||||||| |||||||||||| || ||||||||||||||| ||||||||||    
T  24102009 aaaatgaaatataattaatgatggtggaactcacttagtggtaggatccaccatcta 24102065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 26749626 - 26749581
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggaccca 62  Q
    ||||| |||| ||||||||||||||||||||||||| |||||||||    
T  26749626 taaaaaataattaatgatggtgggacccacttagtgataggaccca 26749581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 1937233 - 1937185
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccacca 65  Q
    ||||| |||| ||||||||||||||||| ||||||| ||||||||||||    
T  1937233 taaaaaataattaatgatggtgggacccgcttagtgataggacccacca 1937185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 34612562 - 34612609
Alignment:
Q  18 aaaatataactaatgatggtgggacccacttagtggtaggacccacca 65  Q
    |||| |||| ||||||||||| ||||||||||||| ||||||||||||    
T  34612562 aaaaaataattaatgatggtgagacccacttagtgataggacccacca 34612609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 37966457 - 37966400
Alignment:
Q  81 tatctctctccaacttgtaaatctccatttattttgtcaaatggagaggatcttcaccc 139  Q
    ||||||||| ||| ||| |||| ||||||||||||| ||||||||||||||||| ||||    
T  37966457 tatctctcttcaaattgcaaat-tccatttattttgccaaatggagaggatcttaaccc 37966400  T

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Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 12177646 - 12177613
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccac 46  Q
    ||||||||||||||||||||||||||||| ||||    
T  12177646 aaaataaaatataactaatgatggtgggatccac 12177613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 12422074 - 12422041
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccac 46  Q
    ||||||||||||||||||||||||||||| ||||    
T  12422074 aaaataaaatataactaatgatggtgggatccac 12422041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 17867727 - 17867690
Alignment:
Q  28 taatgatggtgggacccacttagtggtaggacccacca 65  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  17867727 taatgatggtgggatccacttagtgataggacccacca 17867690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 6014253 - 6014309
Alignment:
Q  78 gtctatctctctccaacttgtaaatctccatttattttgtcaaatggagaggatctt 134  Q
    |||||||| ||||||| ||| ||| ||| |||||||||  |||||||||||||||||    
T  6014253 gtctatctttctccaaattgcaaaactctatttattttagcaaatggagaggatctt 6014309  T

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Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 8412698 - 8412734
Alignment:
Q  103 ctccatttattttgtcaaatggagaggatcttcaccc 139  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  8412698 ctccatttattttgtcaaatgaagaggatcttaaccc 8412734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 9559136 - 9559010
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttat 112  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||| ||||||||||||||    
T  9559136 aaaataaaatataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtatctatctctctccaacttgcaaatctccatttat 9559037  T
Q  113 tttgtcaaatggagaggatcttcaccc 139  Q
    |||| ||||||||||||||||||||||    
T  9559036 tttgccaaatggagaggatcttcaccc 9559010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 4888463 - 4888586
Alignment:
Q  16 ataaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttatttt 115  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||| |||||        |||||||||||||||||||| |||||||||||||||||    
T  4888463 ataaaatataattaatgatggtgggacctacttagtggtaggacccactatctattttttgtgtctatctctctccaacttgcaaatctccatttatttt 4888562  T
Q  116 gtcaaatggagaggatcttcaccc 139  Q
    ||||||||||||||||||||||||    
T  4888563 gtcaaatggagaggatcttcaccc 4888586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 16366515 - 16366637
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| ||||||||||||||| ||||||||||||||| ||||||||||        |||||||||||||||||||| ||| ||||||||||||||    
T  16366515 taaaatataattaatgatggtgggacacacttagtggtaggatccaccatctatttcttatgtctatctctctccaacttgcaaaactccatttattttg 16366614  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
    |||||||||||||||||||||||    
T  16366615 tcaaatggagaggatcttcaccc 16366637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 21151149 - 21151271
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| ||||||||||||||||||||||||||||||| || |||||||        |||||||||||||||||||| ||| ||||||||||||||    
T  21151149 taaaatataattaatgatggtgggacccacttagtggtaggatcctccatctatttcttgtgtctatctctctccaacttgcaaaactccatttattttg 21151248  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
     ||||||||||||||||||||||    
T  21151249 ccaaatggagaggatcttcaccc 21151271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 44647959 - 44648083
Alignment:
Q  17 taaaatataactaatgatggtggga--cccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattt 114  Q
    |||||||||| ||||||||| ||||  ||||||||||||| ||| ||||||||||        |||||||||||||||||||| ||| ||||||||||||    
T  44647959 taaaatataattaatgatggagggagacccacttagtggtcggatccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattt 44648058  T
Q  115 tgtcaaatggagaggatcttcaccc 139  Q
    |||||||||||||||||||||||||    
T  44648059 tgtcaaatggagaggatcttcaccc 44648083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 7362565 - 7362686
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| |||||||||||| ||||| ||||||||| |||||||||||||        |||||||||||||||| ||| ||| ||||||||||||||    
T  7362565 taaaatataattaatgatggtggaacccatttagtggtacgacccaccatctattttttgtgtctatctctctccaatttgcaaaactccatttattttg 7362664  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
    ||||||||||| |||||||||||    
T  7362665 tcaaatggaga-gatcttcaccc 7362686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 18198249 - 18198375
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttat 112  Q
    |||||||||||||| ||||||||||||||| |||||||||| || ||||||||||||        |||||| | ||||||| ||| ||| ||||||||||    
T  18198249 aaaataaaatataattaatgatggtgggactcacttagtggcagaacccaccatctattttttgtgtctatttatctccaatttgcaaaactccatttat 18198348  T
Q  113 tttgtcaaatggagaggatcttcaccc 139  Q
    |||| ||||||||||||||||||||||    
T  18198349 tttgccaaatggagaggatcttcaccc 18198375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 45260505 - 45260384
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| |||||||| ||||| |||||||||||||||| |||| |||||        |||||||||||||||||||| ||| ||| ||||||||||    
T  45260505 taaaatataattaatgatgatgggatccacttagtggtaggatccacaatctattttttgtgtctatctctctccaacttgcaaaactcaatttattttg 45260406  T
Q  117 tcaaatggagaggatcttcacc 138  Q
     |||||||||||||||||||||    
T  45260405 ccaaatggagaggatcttcacc 45260384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 12139323 - 12139446
Alignment:
Q  17 taaaatataactaatgatggtggga-cccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttatttt 115  Q
    |||||||||| |||||||||||||| |||||||| |||||||||||||||||||        |||||||||||||||||||| ||| || ||||||||||    
T  12139323 taaaatataattaatgatggtgggaccccacttaatggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaaacttcatttatttt 12139422  T
Q  116 gtcaaatggagaggatcttcaccc 139  Q
    | |||||| |||| ||||||||||    
T  12139423 gccaaatgaagagaatcttcaccc 12139446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 17 - 136
Target Start/End: Complemental strand, 47226152 - 47226035
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| |||||||||||||||||| |||||||| |||||||||||  |        || ||||||||||||||||| ||| ||||||||||||||    
T  47226152 taaaatataattaatgatggtgggacccatttagtggtgggacccaccat--attttttgtgtttatctctctccaacttgcaaaactccatttattttg 47226055  T
Q  117 tcaaatggagaggatcttca 136  Q
     |||||||||||||||||||    
T  47226054 ccaaatggagaggatcttca 47226035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 25084810 - 25084727
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaactt 96  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||    
T  25084810 aaaataaaatataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctccaactt 25084727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 33450499 - 33450626
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacccaccatcta-nnnnnnnngtctatctctctccaacttgtaaatctccattta 111  Q
    ||||||||| |||| |||||||| |||||||||||||||||| ||||||||||||||         |||||||||||||||| ||| ||| ||| |||||    
T  33450499 aaaataaaaaataattaatgatgatgggacccacttagtggttggacccaccatctattcttttgtgtctatctctctccaaattgcaaaactcaattta 33450598  T
Q  112 ttttgtcaaatggagaggatcttcaccc 139  Q
    ||||  ||||||||||||||||| ||||    
T  33450599 ttttagcaaatggagaggatcttaaccc 33450626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 276
Target Start/End: Original strand, 21195723 - 21195821
Alignment:
Q  174 tttgcaatatattttcattaatttgcatgggttattaattatagtgatttgtttgttaacatattgtagggtctctgcattctgaaaggttggatgaact 273  Q
    |||||||||||||| ||||||||||||||  ||||||     | |||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |    
T  21195723 tttgcaatatatttacattaatttgcatgaattattac----aatgatttgtttgttaacatattgcagggtctctgcattctaaaagcttggatgaatt 21195818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 276
Target Start/End: Original strand, 21200974 - 21201072
Alignment:
Q  174 tttgcaatatattttcattaatttgcatgggttattaattatagtgatttgtttgttaacatattgtagggtctctgcattctgaaaggttggatgaact 273  Q
    |||||||| ||||||||||||||||||||  ||| ||     | |||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||    
T  21200974 tttgcaatgtattttcattaatttgcatgcattactac----aatgatttgtttgttaacatattgcagggtctctccattctgaaagcttggatgaact 21201069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 47500365 - 47500238
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacccaccatcta-nnnnnnnngtctatctctctccaacttgtaaatctccattta 111  Q
    ||||||||| |||| |||||||| |||||||||||||||||| ||||||||||||||         |||||||||||||||| ||  ||| ||| |||||    
T  47500365 aaaataaaaaataattaatgatgatgggacccacttagtggttggacccaccatctattcttttgtgtctatctctctccaaattacaaaactcaattta 47500266  T
Q  112 ttttgtcaaatggagaggatcttcaccc 139  Q
    ||||   |||||||||||||||| ||||    
T  47500265 ttttagtaaatggagaggatcttaaccc 47500238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 989122 - 989239
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttat 112  Q
    |||||| || |||| |||| ||||| ||||| ||||||||||||||||||| || ||        |||||||||||||||| ||| ||| |||||||||     
T  989122 aaaatataaaataattaattatggttggacctacttagtggtaggacccactatatattttttgtgtctatctctctccaaattgcaaa-ctccatttaa 989220  T
Q  113 tttgtcaaatggagaggat 131  Q
    |||||||||||||||||||    
T  989221 tttgtcaaatggagaggat 989239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 39855891 - 39855770
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||| ||| |||||||| |||||||||||||||||||||||| |||||||         |||||||||||||||| ||  ||| ||||||||| ||||    
T  39855891 taaaatttaattaatgatgatgggacccacttagtggtaggaccgaccatcttttttatgtgtctatctctctccaaattacaaa-ctccatttaatttg 39855793  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
    ||||||| |||| ||||| ||||    
T  39855792 tcaaatgaagagaatcttaaccc 39855770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 47271164 - 47271107
Alignment:
Q  78 gtctatctctctccaacttgtaaatctccatttattttgtcaaatggagaggatcttca 136  Q
    |||||||||||||||| ||| ||| ||||||||||||||  ||||||||||||||||||    
T  47271164 gtctatctctctccaaattgcaaa-ctccatttattttgctaaatggagaggatcttca 47271107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 47799978 - 47799933
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggaccca 62  Q
    ||||| |||| ||||||||||||||||||||||||| |||||||||    
T  47799978 taaaaaataattaatgatggtgggacccacttagtgataggaccca 47799933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 30588532 - 30588576
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggaccc 61  Q
    ||||| |||| ||||||||||||||||||||||||| ||||||||    
T  30588532 taaaaaataattaatgatggtgggacccacttagtgataggaccc 30588576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 34986028 - 34985900
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacccaccatcta-nnnnnnnngtctatctctctccaacttgtaaatctccattta 111  Q
    ||||||||| |||| |||||||| |||||| || ||||||||  |||||||||||||         |||||||||||||||| ||| ||| ||| |||||    
T  34986028 aaaataaaaaataattaatgatgatgggactcatttagtggtttgacccaccatctattcttttgtgtctatctctctccaaattgcaaaactcaattta 34985929  T
Q  112 ttttgtcaaatggagaggatcttcacccg 140  Q
    ||||  ||||| |||||||| || |||||    
T  34985928 ttttagcaaattgagaggattttaacccg 34985900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 69
Target Start/End: Complemental strand, 46802392 - 46802357
Alignment:
Q  34 tggtgggacccacttagtggtaggacccaccatcta 69  Q
    ||||||||||||||||||||||||||||||| ||||    
T  46802392 tggtgggacccacttagtggtaggacccaccgtcta 46802357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 11828991 - 11828945
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggac 59  Q
    ||||||||| |||| |||||||||||| ||||||||| |||||||||    
T  11828991 aaaataaaaaataattaatgatggtggaacccacttaatggtaggac 11828945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 19027751 - 19027713
Alignment:
Q  28 taatgatggtgggacccacttagtggtaggacccaccat 66  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  19027751 taatgatggtgggatccacttagtgataggacccaccat 19027713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 19889112 - 19889066
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccac 63  Q
    ||||| |||| |||||||||||| |||||||||||| ||||||||||    
T  19889112 taaaaaataattaatgatggtggaacccacttagtgataggacccac 19889066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 20726885 - 20726923
Alignment:
Q  28 taatgatggtgggacccacttagtggtaggacccaccat 66  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  20726885 taatgatggtgggatccacttagtgataggacccaccat 20726923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 32915949 - 32915999
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacccac 63  Q
    |||| ||||||||| | ||||||||||||| |||||| |||||||||||||    
T  32915949 aaaaaaaaatataattcatgatggtgggactcacttaatggtaggacccac 32915999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 32916162 - 32916212
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacccac 63  Q
    ||||||||| |||| |||||||||||| | ||||||||||||| |||||||    
T  32916162 aaaataaaaaataattaatgatggtggaatccacttagtggtatgacccac 32916212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 4269187 - 4269224
Alignment:
Q  28 taatgatggtgggacccacttagtggtaggacccacca 65  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  4269187 taatgatggtgggatccacttagtgataggacccacca 4269224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 14696825 - 14696788
Alignment:
Q  28 taatgatggtgggacccacttagtggtaggacccacca 65  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  14696825 taatgatggtgggatccacttagtgataggacccacca 14696788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 30102501 - 30102538
Alignment:
Q  28 taatgatggtgggacccacttagtggtaggacccacca 65  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  30102501 taatgatggtgggatccacttagtgataggacccacca 30102538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 4804445 - 4804567
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||| ||||||||||||||    
T  4804445 taaaatataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctccaacttgtaaaactccatttattttg 4804544  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
     ||||||||||||||||||||||    
T  4804545 ccaaatggagaggatcttcaccc 4804567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 13089831 - 13089704
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttat 112  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||        |||||||||||||||||||| ||| | ||||||||    
T  13089831 aaaataaaatataattaatgatggtggggcccacttagtggtaggacccaccatctatattttgtgtctatctctctccaacttgcaaaacaccatttat 13089732  T
Q  113 tttgtcaaatggagaggatcttcacccg 140  Q
    |||| |||||||||||||||||||||||    
T  13089731 tttgccaaatggagaggatcttcacccg 13089704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 7162081 - 7162203
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||        |||||||||||||||||||| ||| |||||||||||||     
T  7162081 taaaatataattaatgatggtgggacccacttagtagtaggacccaccatctatttcttgtgtctatctctctccaacttgcaaaactccatttatttta 7162180  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
    ||||||||||| |||||||||||    
T  7162181 tcaaatggagatgatcttcaccc 7162203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 12412634 - 12412756
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||        |||||||||||||||||||| ||| ||||||||||||||    
T  12412634 taaaatataattaatgatggtggaacccacttagtggtaggacccaccatctatttcttgtgtctatctctctccaacttgcaaaactccatttattttg 12412733  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
     |||||||||| |||||| ||||    
T  12412734 ccaaatggagaagatctttaccc 12412756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 21159447 - 21159325
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||        |||||| ||||||||||||| ||| || ||||||||||     
T  21159447 taaaatataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatttctctccaacttgcaaaacttcatttatttta 21159348  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
     ||||||||||||||||||||||    
T  21159347 acaaatggagaggatcttcaccc 21159325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 1249224 - 1249105
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||        |||| ||||||||||||||  ||| ||||||||||||||    
T  1249224 taaaatataattaatgatggtgggacccacttagtggtaggacccaccatcta--ttttttgtctgtctctctccaacttacaaaactccatttattttg 1249127  T
Q  117 tcaaatggagaggatcttcacc 138  Q
     |||||||||||||||||||||    
T  1249126 ccaaatggagaggatcttcacc 1249105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 27826531 - 27826654
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttat 112  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||        ||||||||||||| | |||| |||||| || ||||    
T  27826531 aaaataaaatataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctcaaccttgcaaatcttcagttat 27826630  T
Q  113 tttgtcaaatggagaggatcttca 136  Q
    |||  |||||||||||||||||||    
T  27826631 tttaccaaatggagaggatcttca 27826654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 17944159 - 17944281
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| |||||||||||||||||| |||||||||||||| ||||||||        |||||||||||||||||||  ||| ||||||||||||||    
T  17944159 taaaatataattaatgatggtgggacccatttagtggtaggacctaccatctattttttgtgtctatctctctccaacttacaaaactccatttattttg 17944258  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
     |||||| |||||||||||||||    
T  17944259 ccaaatgaagaggatcttcaccc 17944281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 227630 - 227522
Alignment:
Q  29 aatgatggtgggacccacttagtggtaggacccaccatctannnnnnnn-gtctatctctctccaacttgtaaatctccatttattttgtcaaatggaga 127  Q
    ||||||| ||||| |||||||||||||||||||||||||||         ||||||||||||||||  || ||| |||||||||||||  ||||||||||    
T  227630 aatgatgatgggatccacttagtggtaggacccaccatctattcttttgtgtctatctctctccaaaatgcaaaactccatttattttagcaaatggaga 227531  T
Q  128 ggatcttca 136  Q
    |||||||||    
T  227530 ggatcttca 227522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 28 - 131
Target Start/End: Complemental strand, 7215919 - 7215816
Alignment:
Q  28 taatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttgtcaaatggaga 127  Q
    ||||||| |||||||||| ||||||||||||||||| |||||        |||||||||||||||| ||||  |  |||||||||||| |||||||||||    
T  7215919 taatgatagtgggacccaattagtggtaggacccactatctattttatgtgtctatctctctccaaattgtgcacttccatttattttatcaaatggaga 7215820  T
Q  128 ggat 131  Q
    ||||    
T  7215819 ggat 7215816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 32737915 - 32737976
Alignment:
Q  78 gtctatctctctccaacttgtaaatctccatttattttgtcaaatggagaggatcttcaccc 139  Q
    ||||||||||||||||| || ||| ||| |||||||||| ||||||||||||||||||||||    
T  32737915 gtctatctctctccaacctgcaaaactctatttattttgccaaatggagaggatcttcaccc 32737976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 29698160 - 29698212
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatcta 69  Q
    |||||||||| |||||||||||||||||||||| |||||||| ||||||||||    
T  29698160 taaaatataattaatgatggtgggacccacttaatggtaggatccaccatcta 29698212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 2800677 - 2800574
Alignment:
Q  29 aatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttgtcaaatggagag 128  Q
    ||||||||||||||||||||| ||||| || |||| |||||        |||||||||||||||| ||||  || |||||| ||||| ||||||||||||    
T  2800677 aatgatggtgggacccacttaatggtatgatccactatctattttatgtgtctatctctctccaaattgtgtatttccattaattttatcaaatggagag 2800578  T
Q  129 gatc 132  Q
    ||||    
T  2800577 gatc 2800574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 24484876 - 24484924
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccacca 65  Q
    ||||| |||| ||||||||||||||||||||||||| ||||||||||||    
T  24484876 taaaaaataattaatgatggtgggacccacttagtgataggacccacca 24484924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 2720366 - 2720411
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtagga 58  Q
    |||||| || |||| |||||||||||||||||||||||||||||||    
T  2720366 aaaatataaaataattaatgatggtgggacccacttagtggtagga 2720411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 30460882 - 30460944
Alignment:
Q  78 gtctatctctctccaacttgtaaatctccatttattttgtcaaatggagaggatcttcacccgt 141  Q
    |||||||| ||||||| ||| ||| ||||||||||||||||||||||||| ||| || ||||||    
T  30460882 gtctatctttctccaaattgcaaa-ctccatttattttgtcaaatggagatgatgttaacccgt 30460944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 1516219 - 1516162
Alignment:
Q  82 atctctctccaacttgtaaatctccatttattttgtcaaatggagaggatcttcacccg 140  Q
    |||||||||||| ||| ||| |||||||||||||| |||||||| |||||||| |||||    
T  1516219 atctctctccaaattgcaaa-ctccatttattttgccaaatggataggatcttaacccg 1516162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 1518308 - 1518251
Alignment:
Q  82 atctctctccaacttgtaaatctccatttattttgtcaaatggagaggatcttcacccg 140  Q
    |||||||||||| ||| ||| |||||||||||||| |||||||| |||||||| |||||    
T  1518308 atctctctccaaattgcaaa-ctccatttattttgccaaatggataggatcttaacccg 1518251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 7098263 - 7098226
Alignment:
Q  28 taatgatggtgggacccacttagtggtaggacccacca 65  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  7098263 taatgatggtgggatccacttagtgataggacccacca 7098226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 3177061 - 3177093
Alignment:
Q  106 catttattttgtcaaatggagaggatcttcacc 138  Q
    |||||||||| ||||||||||||||||||||||    
T  3177061 catttattttatcaaatggagaggatcttcacc 3177093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 32254113 - 32254061
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacccacca 65  Q
    ||||||||| |||| ||||||| ||||||| |||||| || ||||||||||||    
T  32254113 aaaataaaaaataattaatgatagtgggactcacttaatgataggacccacca 32254061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 18625503 - 18625377
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttat 112  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||        |||| ||||||||||||||| ||||||||||||||    
T  18625503 aaaataaaatataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctttctctctccaacttgcaaatctccatttat 18625404  T
Q  113 tttgtcaaatggagaggatcttcaccc 139  Q
    |||| ||||||||||||||||||||||    
T  18625403 tttgccaaatggagaggatcttcaccc 18625377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 35660687 - 35660562
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||| ||| ||||||||||||||    
T  35660687 taaaatataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttg 35660588  T
Q  117 tcaaatggagaggatcttcacccgtc 142  Q
     |||||||||||||||||||||||||    
T  35660587 ccaaatggagaggatcttcacccgtc 35660562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 32129695 - 32129573
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||| |||| ||||||||||||||    
T  32129695 taaaatataattaatgatggtgggacccacttagtggtaggacccaccatctatttttggtgtctatctctctccaacttataaaactccatttattttg 32129596  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
     ||||||||||||||||||||||    
T  32129595 ccaaatggagaggatcttcaccc 32129573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 13032111 - 13032237
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttat 112  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||        |||||||||||||||||||| ||| ||||||||||    
T  13032111 aaaataaaatataattaatgatggtgggacccatttagtggtaggactcaccatctatttcttgtgtctatctctctccaacttgcaaaactccatttat 13032210  T
Q  113 tttgtcaaatggagaggatcttcaccc 139  Q
    |||| ||||||||||||||||||||||    
T  13032211 tttgccaaatggagaggatcttcaccc 13032237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 37266728 - 37266850
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||        |||||||||||||||||||| ||| ||||||||||||||    
T  37266728 taaaatataattaatgatggtgggacccacttagtggtatgacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttg 37266827  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
     ||||||||||||||||||||||    
T  37266828 ccaaatggagaggatcttcaccc 37266850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 39902412 - 39902534
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| |||||||||||| | ||| |||||||||||||||||||||||        || ||||||||||||||||||||| ||||||||||||||    
T  39902412 taaaatataattaatgatggtggaatccatttagtggtaggacccaccatctatttcttgtgtttatctctctccaacttgtaaaactccatttattttg 39902511  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
    |||||||||||||| ||||||||    
T  39902512 tcaaatggagaggaacttcaccc 39902534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 11775790 - 11775909
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| |||||| |||||||||||||||||||||||| ||||||||||        |||||||||||||||||||| ||| |||||||||||||     
T  11775790 taaaatataattaatgacggtgggacccacttagtggtaggatccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 11775889  T
Q  117 tcaaatggagaggatcttca 136  Q
     |||||||||||||||||||    
T  11775890 ccaaatggagaggatcttca 11775909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 4895813 - 4895699
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||| ||| ||||||||||||||    
T  4895813 taaaatataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttg 4895714  T
Q  117 tcaaatggagaggat 131  Q
     |||||  |||||||    
T  4895713 ccaaataaagaggat 4895699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 14349800 - 14349922
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||        |||| ||||||||||||||  ||| |||||||||||||     
T  14349800 taaaatataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctgtctctctccaacttacaaaactccatttatttta 14349899  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
     ||||| ||||||||||||||||    
T  14349900 ccaaatagagaggatcttcaccc 14349922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 34827189 - 34827311
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| ||| ||||||||||||||||||||||||||| ||||||||||        |||||||||||||||||||| | | ||||||||||||||    
T  34827189 taaaatataattaaagatggtgggacccacttagtggtaggatccaccatctattttttttgtctatctctctccaacttgcataactccatttattttg 34827288  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
      ||||||||| |||||||||||    
T  34827289 ctaaatggagatgatcttcaccc 34827311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 40753240 - 40753118
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||        |||||||| ||||||||||| ||| ||  ||||||||||    
T  40753240 taaaatataattaatgatggtgggacccacttagtggtaggacccaccatatattttttgtgtctatctttctccaacttgcaaaactttatttattttg 40753141  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
     ||||| ||||||||||||||||    
T  40753140 ccaaatagagaggatcttcaccc 40753118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 28 - 146
Target Start/End: Original strand, 29341003 - 29341120
Alignment:
Q  28 taatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttgtcaaatggaga 127  Q
    |||||||||||||||||||||| | ||||||||||| |||||        |||||||||||||||| ||| | | ||||||||||| |  ||||||||||    
T  29341003 taatgatggtgggacccacttaatagtaggacccactatctattttctgtgtctatctctctccaaattgcata-ctccatttattataccaaatggaga 29341101  T
Q  128 ggatcttcacccgtcagaa 146  Q
    ||||||| |||||||||||    
T  29341102 ggatctttacccgtcagaa 29341120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 4592797 - 4592849
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatcta 69  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  4592797 taaaatataattaatgatggtgggacccacttagtggtaagacccaccatcta 4592849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 8441049 - 8440943
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| ||||||||||||||| |||||||||||| | | |||||||||        ||||||||  |||||||||| ||| ||||||||||||||    
T  8441049 taaaatataattaatgatggtgggacacacttagtggtatgtcgcaccatctatttttggtgtctatctacctccaacttgcaaaactccatttattttg 8440950  T
Q  117 tcaaatg 123  Q
     ||||||    
T  8440949 ccaaatg 8440943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 43309116 - 43309225
Alignment:
Q  28 taatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttgtcaaatggaga 127  Q
    |||||||||||| ||||| ||| ||||| || |||| |||||        |||||||||||||||||||| ||| ||||||||||||| ||||||  |||    
T  43309116 taatgatggtggaacccatttaatggtaagatccactatctattttttatgtctatctctctccaacttgcaaaactccatttattttatcaaataaaga 43309215  T
Q  128 ggatcttcac 137  Q
    ||||||||||    
T  43309216 ggatcttcac 43309225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 3041390 - 3041338
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacccacca 65  Q
    ||||||||| |||| ||||||||||||||||| ||||||| ||||||||||||    
T  3041390 aaaataaaaaataattaatgatggtgggacccgcttagtgataggacccacca 3041338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 36290599 - 36290647
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccacca 65  Q
    ||||| |||| |||||||||||||| |||||||||| ||||||||||||    
T  36290599 taaaaaataattaatgatggtgggatccacttagtgataggacccacca 36290647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 28142853 - 28142807
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccac 63  Q
    |||||||||| ||||||||||||||| |||||| |||||||| ||||    
T  28142853 taaaatataattaatgatggtgggactcacttaatggtaggatccac 28142807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 2984472 - 2984427
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtagga 58  Q
    ||||||||| |||| |||||||||||||||||| |||||| |||||    
T  2984472 aaaataaaaaataattaatgatggtgggacccatttagtgatagga 2984427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 40162737 - 40162774
Alignment:
Q  28 taatgatggtgggacccacttagtggtaggacccacca 65  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  40162737 taatgatggtgggatccacttagtgataggacccacca 40162774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 13238674 - 13238797
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttat 112  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||        |||||||||||||||||||| ||||||||||||||    
T  13238674 aaaataaaatataattaatgatggtgggacccacttggtggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaatctccatttat 13238773  T
Q  113 tttgtcaaatggagaggatcttca 136  Q
    |||| |||||||||||||||||||    
T  13238774 tttgccaaatggagaggatcttca 13238797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 35316822 - 35316946
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||        |||||||||||||||||||| ||| ||||||||||||||    
T  35316822 taaaatataattaatgatggtgggacccacttagtggtaggatccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttg 35316921  T
Q  117 tcaaatggagaggatcttcacccgt 141  Q
     ||||||||||||||||||||||||    
T  35316922 ccaaatggagaggatcttcacccgt 35316946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 28564889 - 28565012
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||        |||||||||||| ||||||  ||| ||||||||||||||    
T  28564889 taaaatataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctacaacttaaaaaactccatttattttg 28564988  T
Q  117 tcaaatggagaggatcttcacccg 140  Q
     |||||||||||||||||||||||    
T  28564989 ccaaatggagaggatcttcacccg 28565012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 23259565 - 23259443
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| |||||||||||||| ||||||||| ||||||||||||| |||        |||||||||||||||||||| ||| | ||||||||||||    
T  23259565 taaaatataattaatgatggtgggatccacttagtagtaggacccaccagctattttttgtgtctatctctctccaacttgcaaaacaccatttattttg 23259466  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
     ||||||||||||||||||||||    
T  23259465 ccaaatggagaggatcttcaccc 23259443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 45625096 - 45625033
Alignment:
Q  78 gtctatctctctccaacttgtaaatctccatttattttgtcaaatggagaggatcttcacccgt 141  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  45625096 gtctatctctctccaacttgtaaaactccatttattttgccaaatggagaggatcttcacccgt 45625033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 11864927 - 11864990
Alignment:
Q  78 gtctatctctctccaacttgtaaatctccatttattttgtcaaatggagaggatcttcacccgt 141  Q
    |||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||    
T  11864927 gtctatctctctccaacttgtaaaactccatttattttgataaatggagaggatcttcacccgt 11864990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 139
Target Start/End: Original strand, 2063361 - 2063472
Alignment:
Q  28 taatgatggtgggacccacttagtggtaggaccca-ccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttgtcaaatggag 126  Q
    |||||||||||| |||||||| ||||||||||| | |||||||        |||||||||||||||| ||| ||| ||| ||||||||||||||||| ||    
T  2063361 taatgatggtggaacccacttggtggtaggaccaaaccatctattttttgtgtctatctctctccaaattgcaaa-ctctatttattttgtcaaatgaag 2063459  T
Q  127 aggatcttcaccc 139  Q
    |||||||| ||||    
T  2063460 aggatcttaaccc 2063472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 8988848 - 8988895
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacc 60  Q
    ||||||||| |||| ||||||||||||||||||||||||| |||||||    
T  8988848 aaaataaaaaataattaatgatggtgggacccacttagtgataggacc 8988895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 4446974 - 4446860
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    ||||| |||| ||||||| |||  ||||| |||||||||||| |||| |||||        |||||||||||| ||| ||||| |  ||||||||||||     
T  4446974 taaaaaataattaatgatagtgaaacccaattagtggtaggatccactatctattttatgtgtctatctctcttcaaattgtacacttccatttatttta 4446875  T
Q  117 tcaaatggagaggat 131  Q
    |||||||||||||||    
T  4446874 tcaaatggagaggat 4446860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 136
Target Start/End: Complemental strand, 32009972 - 32009934
Alignment:
Q  98 taaatctccatttattttgtcaaatggagaggatcttca 136  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  32009972 taaaactccatttattttgtcaaatggagaggatcttca 32009934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 374990 - 375038
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccacca 65  Q
    ||||| |||| ||||||||||||||||||||||||  ||||||||||||    
T  374990 taaaaaataattaatgatggtgggacccacttagtaataggacccacca 375038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 40640731 - 40640783
Alignment:
Q  81 tatctctctccaacttgtaaatctccatttattttgtcaaatggagaggatct 133  Q
    ||||||||||||| ||| ||| |||||||||||||  ||||||||||||||||    
T  40640731 tatctctctccaaattgcaaaactccatttattttaacaaatggagaggatct 40640783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 30709118 - 30709152
Alignment:
Q  28 taatgatggtgggacccacttagtggtaggaccca 62  Q
    |||||||||||||| ||||||||||||||||||||    
T  30709118 taatgatggtgggatccacttagtggtaggaccca 30709152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 13780506 - 13780543
Alignment:
Q  28 taatgatggtgggacccacttagtggtaggacccacca 65  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  13780506 taatgatggtgggatccacttagtgataggacccacca 13780543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 40254217 - 40254180
Alignment:
Q  28 taatgatggtgggacccacttagtggtaggacccacca 65  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  40254217 taatgatggtgggatccacttagtgataggacccacca 40254180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 21454572 - 21454520
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatcta 69  Q
    ||||| |||| |||||||||||| ||||||||| ||||| ||||||| |||||    
T  21454572 taaaaaataattaatgatggtggaacccacttaatggtatgacccacaatcta 21454520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 23459924 - 23459880
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggaccc 61  Q
    ||||| |||| |||||||||||||||||| |||||| ||||||||    
T  23459924 taaaaaataattaatgatggtgggacccatttagtgataggaccc 23459880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 29188650 - 29188698
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccacca 65  Q
    ||||| |||| ||||||||||||||||| ||||||| |||||| |||||    
T  29188650 taaaaaataattaatgatggtgggacccgcttagtgataggacgcacca 29188698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 32444384 - 32444416
Alignment:
Q  107 atttattttgtcaaatggagaggatcttcaccc 139  Q
    |||||||||||||||||||||||||||| ||||    
T  32444384 atttattttgtcaaatggagaggatcttaaccc 32444416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 19901996 - 19901874
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||| ||| |||||||||||||     
T  19901996 taaaatataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 19901897  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
     ||||||||||||||||||||||    
T  19901896 ccaaatggagaggatcttcaccc 19901874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 56558276 - 56558398
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||        |||||||||||||||||||| ||| ||||||||||||||    
T  56558276 taaaatataattaatgatggtgggacccacttagtgataggacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttg 56558375  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
     ||||||||||||||||||||||    
T  56558376 ccaaatggagaggatcttcaccc 56558398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 5416543 - 5416422
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||        |||||||||||||||||||| ||| ||||||||||||||    
T  5416543 taaaatataattaatgatggtgggacccacttagtggtaggacccacaatctatttttgt-gtctatctctctccaacttgcaaaactccatttattttg 5416445  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
    |||||||||||||||||||||||    
T  5416444 tcaaatggagaggatcttcaccc 5416422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 33247218 - 33247085
Alignment:
Q  7 tcgaagaaaataaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctcc 106  Q
    ||||| |||||||||||||| |||||||||||| ||||| |||||||||| ||||||||||||        |||||||||||||||||||| ||| ||||    
T  33247218 tcgaaaaaaataaaatataattaatgatggtggaacccatttagtggtagaacccaccatctatttcttgtgtctatctctctccaacttgcaaaactcc 33247119  T
Q  107 atttattttgtcaaatggagaggatcttcacccg 140  Q
    |||||||||| |||||||||||||||||||||||    
T  33247118 atttattttgccaaatggagaggatcttcacccg 33247085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 3952248 - 3952126
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||        ||||||||||||||||||||  || ||||||||||||||    
T  3952248 taaaatataattaatgatggtgagacccacttagtggtaggacccaccatctattttttttgtctatctctctccaacttgccaaactccatttattttg 3952149  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
     ||||||||||||||||||||||    
T  3952148 ccaaatggagaggatcttcaccc 3952126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 5763240 - 5763118
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||| |||||| |||||||    
T  5763240 taaaatataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtttctatctctctccaacttgtaaaactccatatattttg 5763141  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
     ||||| ||||||||||||||||    
T  5763140 ccaaattgagaggatcttcaccc 5763118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 18207118 - 18206996
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||        ||||||||||||| |||||| ||| || |||||||||||    
T  18207118 taaaatataattaatgatgatgggacccacttagtggtaggacccaccatctattttttttgtctatctctctctaacttgcaaaactacatttattttg 18207019  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
    |||||||||||||||||||||||    
T  18207018 tcaaatggagaggatcttcaccc 18206996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 23610639 - 23610761
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||  |||||||||||||||||||||||||||| |||||||||||||        |||||||||||||||||||| ||| |||||||||||||     
T  23610639 taaaatatatttaatgatggtgggacccacttagtggtatgacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 23610738  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
    |||||||||||||||||||||||    
T  23610739 tcaaatggagaggatcttcaccc 23610761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 34778418 - 34778539
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||        |||||||||||| ||||||| ||| ||||||||||||||    
T  34778418 taaaatataattaatgatggtgggacccacttagtggtaggatccaccatctattttttgtgtctatctctcttcaacttgcaaaactccatttattttg 34778517  T
Q  117 tcaaatggagaggatcttcacc 138  Q
     |||||||||||||||||||||    
T  34778518 ccaaatggagaggatcttcacc 34778539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 10 - 140
Target Start/End: Complemental strand, 12312561 - 12312430
Alignment:
Q  10 aagaaaataaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnn-gtctatctctctccaacttgtaaatctccat 108  Q
    |||||| |||||||||| |||||||| |||||||||||||||||||||| ||||||||||         |||||||||||||||||||| ||| ||||||    
T  12312561 aagaaagtaaaatataattaatgatgatgggacccacttagtggtaggatccaccatctatttttttttgtctatctctctccaacttgcaaaactccat 12312462  T
Q  109 ttattttgtcaaatggagaggatcttcacccg 140  Q
    |||||||| |||||||||||||||||||||||    
T  12312461 ttattttgccaaatggagaggatcttcacccg 12312430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 24073617 - 24073735
Alignment:
Q  21 atataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttgtcaa 120  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||        |||||||||||||||||||  |||||||||||||||||| |||    
T  24073617 atataattaatgatggcgggacccacttagtggtaggacccaccatctatttgttgtgtctatctctctccaacttacaaatctccatttattttgccaa 24073716  T
Q  121 atggagaggatcttcaccc 139  Q
    |||| ||||||||||||||    
T  24073717 atggggaggatcttcaccc 24073735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 38079798 - 38079676
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| |||||||||||| | ||||||||| |||||||||||||||||        ||||||||||||| |||| | ||| ||||||||||||||    
T  38079798 taaaatataattaatgatggtggaatccacttagtagtaggacccaccatctatttcttgtgtctatctctctcaaactagcaaaactccatttattttg 38079699  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
    | |||||||||||||||||||||    
T  38079698 ttaaatggagaggatcttcaccc 38079676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 30567898 - 30568008
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| |||||||| ||| |||||||||||||||||||||||||||||        |||||||||||| ||||||| ||| ||||||||||||||    
T  30567898 taaaatataattaatgatgatggaacccacttagtggtaggacccaccatctattttttgtgtctatctctcttcaacttgcaaaactccatttattttg 30567997  T
Q  117 tcaaatggaga 127  Q
     ||||||||||    
T  30567998 ccaaatggaga 30568008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 33262630 - 33262506
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| |||||||||||||||| | |||||||||||| ||||||||||        ||||||||||||| |||||| ||| | | ||||||||||    
T  33262630 taaaatataattaatgatggtgggacctatttagtggtaggatccaccatctattttttgtgtctatctctctctaacttgcaaaacacaatttattttg 33262531  T
Q  117 tcaaatggagaggatcttcacccgt 141  Q
     ||||| ||||||||||||||||||    
T  33262530 ccaaatagagaggatcttcacccgt 33262506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 12153212 - 12153275
Alignment:
Q  78 gtctatctctctccaacttgtaaatctccatttattttgtcaaatggagaggatcttcacccgt 141  Q
    |||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||    
T  12153212 gtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatcttcacccgt 12153275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 39862514 - 39862637
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| |||||||||||| || || |||||| |||||| |||||||||        ||||||||||||| |||||| |||  || |||||||||     
T  39862514 taaaatataattaatgatggtggaactcatttagtgataggacacaccatctattttttgtgtctatctctctcaaacttgcaaaattctatttatttta 39862613  T
Q  117 tcaaatggagaggatcttcacccg 140  Q
    ||||||||||||||||||||||||    
T  39862614 tcaaatggagaggatcttcacccg 39862637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 33524321 - 33524381
Alignment:
Q  79 tctatctctctccaacttgtaaatctccatttattttgtcaaatggagaggatcttcaccc 139  Q
    ||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||    
T  33524321 tctatctctctccaacttccaaatctccatttattttgccaaatggagaggatcttcaccc 33524381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 52018822 - 52018882
Alignment:
Q  79 tctatctctctccaacttgtaaatctccatttattttgtcaaatggagaggatcttcaccc 139  Q
    ||||||||||||||||||| ||| ||||||||||||||  |||||||||||||||||||||    
T  52018822 tctatctctctccaacttgcaaaactccatttattttgctaaatggagaggatcttcaccc 52018882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 1871270 - 1871388
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttat 112  Q
    |||||| || |||| |||||||| ||||||||||||||| |||||| |||| |||||        |||||||||||||||| ||| | | ||||||||||    
T  1871270 aaaatataaaataattaatgatgatgggacccacttagtagtaggatccactatctatattttttgtctatctctctccaaattgcata-ctccatttat 1871368  T
Q  113 tttgtcaaatggagaggatc 132  Q
    |||||||||| |||||||||    
T  1871369 tttgtcaaattgagaggatc 1871388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 12241486 - 12241440
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccac 63  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  12241486 taaaatataattaatgatggtgggacccacttagtggtaggacccac 12241440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 31862298 - 31862246
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatcta 69  Q
    ||||| |||| ||||||||||||||||||||||||||||||| ||||||||||    
T  31862298 taaaaaataattaatgatggtgggacccacttagtggtaggatccaccatcta 31862246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 134
Target Start/End: Complemental strand, 47922430 - 47922327
Alignment:
Q  32 gatggtgggacccacttagtggtaggacccaccatcta-nnnnnnnngtctatctctctccaacttgtaaatctccatttattttgtcaaatggagagga 130  Q
    |||| |||||||||||||||||||||||||||||||||         |||||| ||||||||| ||| ||| ||| |||||||||  |||||||||||||    
T  47922430 gatgatgggacccacttagtggtaggacccaccatctattcttttgtgtctatatctctccaaattgcaaaactcaatttattttagcaaatggagagga 47922331  T
Q  131 tctt 134  Q
    ||||    
T  47922330 tctt 47922327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 56269153 - 56269106
Alignment:
Q  18 aaaatataactaatgatggtgggacccacttagtggtaggacccacca 65  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||    
T  56269153 aaaaaataattaatgatggtgggacccacttagtggtaggacccacca 56269106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 47922157 - 47922101
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacccaccatcta 69  Q
    |||||||||||||  |||||||||||| ||||||||||||||| ||||||| |||||    
T  47922157 aaaataaaatatatttaatgatggtggaacccacttagtggtaagacccactatcta 47922101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 5524444 - 5524492
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccacca 65  Q
    ||||| |||| |||||||||||||||||||||| || ||||||||||||    
T  5524444 taaaaaataattaatgatggtgggacccacttactgataggacccacca 5524492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 48084603 - 48084555
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccacca 65  Q
    ||||| |||| ||||||||||||||||||||||||| ||| ||||||||    
T  48084603 taaaaaataattaatgatggtgggacccacttagtgctagaacccacca 48084555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 141
Target Start/End: Complemental strand, 56453886 - 56453775
Alignment:
Q  29 aatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttgtcaaatggagag 128  Q
    ||||||||||||||||||||| || |||||||||||| |||        |||||||||||||||| ||| |  | |||||||||||    ||||||||||    
T  56453886 aatgatggtgggacccacttaatgataggacccaccacctattttttgtgtctatctctctccaaattgcatct-tccatttatttctataaatggagag 56453788  T
Q  129 gatcttcacccgt 141  Q
    |||||| ||||||    
T  56453787 gatcttaacccgt 56453775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 25219003 - 25219040
Alignment:
Q  28 taatgatggtgggacccacttagtggtaggacccacca 65  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  25219003 taatgatggtgggatccacttagtgataggacccacca 25219040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 32146510 - 32146547
Alignment:
Q  28 taatgatggtgggacccacttagtggtaggacccacca 65  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  32146510 taatgatggtgggatccacttagtgataggacccacca 32146547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 46238974 - 46239011
Alignment:
Q  28 taatgatggtgggacccacttagtggtaggacccacca 65  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  46238974 taatgatggtgggatccacttagtgataggacccacca 46239011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 132
Target Start/End: Original strand, 49811509 - 49811538
Alignment:
Q  103 ctccatttattttgtcaaatggagaggatc 132  Q
    ||||||||||||||||||||||||||||||    
T  49811509 ctccatttattttgtcaaatggagaggatc 49811538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 53526096 - 53526133
Alignment:
Q  28 taatgatggtgggacccacttagtggtaggacccacca 65  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  53526096 taatgatggtgggatccacttagtgataggacccacca 53526133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 55160438 - 55160401
Alignment:
Q  28 taatgatggtgggacccacttagtggtaggacccacca 65  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  55160438 taatgatggtgggatccacttagtgataggacccacca 55160401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 36532683 - 36532738
Alignment:
Q  78 gtctatctctctccaacttgtaaatctccatttattttgtcaaatggagaggatctt 134  Q
    ||||||||||||| || |||| || ||||||||||||| ||| ||||||||||||||    
T  36532683 gtctatctctctctaaattgtgaa-ctccatttattttatcagatggagaggatctt 36532738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 36688260 - 36688224
Alignment:
Q  23 ataactaatgatggtgggacccacttagtggtaggac 59  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  36688260 ataattaatgatggtgggacccacttagtgataggac 36688224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 37002329 - 37002281
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccacca 65  Q
    ||||| |||| ||||||||||||||||||||||||  ||||| ||||||    
T  37002329 taaaaaataattaatgatggtgggacccacttagtaataggatccacca 37002281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 42010114 - 42010158
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggaccc 61  Q
    ||||| |||| |||||||||||||||||| |||||| ||||||||    
T  42010114 taaaaaataattaatgatggtgggacccatttagtgataggaccc 42010158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 43720029 - 43719903
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttat 112  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| || ||        |||||||||||||||||||| ||| ||||||||||    
T  43720029 aaaataaaatataattaatgatggtgggacccacttagtggtaggacccacaatttattttttgtgtctatctctctccaacttgcaaaactccatttat 43719930  T
Q  113 tttgtcaaatggagaggatcttcaccc 139  Q
    ||||| |||||||||||||||||||||    
T  43719929 tttgttaaatggagaggatcttcaccc 43719903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 27033648 - 27033770
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||||||        |||||||||||||||||||| ||| |||||||||||||     
T  27033648 taaaatataattaatgatggtgggatccacttagtggtaggacccaccatctatttcttgtgtctatctctctccaacttgcaaaactccatttatttta 27033747  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
    ||||||||||| |||||||||||    
T  27033748 tcaaatggagatgatcttcaccc 27033770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 19830509 - 19830387
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||        |||||| |||| |||||||| ||| ||||||||||||||    
T  19830509 taaaatataattaatgatggtgggacccacttaatggtaggacccaccatctattttttgtgtctatttctccccaacttgcaaaactccatttattttg 19830410  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
     ||||||||||||||||||||||    
T  19830409 ccaaatggagaggatcttcaccc 19830387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 140
Target Start/End: Original strand, 24754673 - 24754777
Alignment:
Q  36 gtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttgtcaaatggagaggatcttc 135  Q
    ||||||||||||||||||||||||  ||||||||        |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  24754673 gtgggacccacttagtggtaggacataccatctattttgtgtgtctatctctctccaacttgtaaaactccatttattttgccaaatggagaggatcttc 24754772  T
Q  136 acccg 140  Q
    |||||    
T  24754773 acccg 24754777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 140
Target Start/End: Original strand, 24763670 - 24763774
Alignment:
Q  36 gtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttgtcaaatggagaggatcttc 135  Q
    ||||||||||||||||||||||||  ||||||||        |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  24763670 gtgggacccacttagtggtaggacataccatctattttgtgtgtctatctctctccaacttgtaaaactccatttattttgccaaatggagaggatcttc 24763769  T
Q  136 acccg 140  Q
    |||||    
T  24763770 acccg 24763774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 2229980 - 2230102
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| |||||||||||| | |||||||||||||||||||| ||||||        |||||||||||||||||||| ||| ||||| ||||||||    
T  2229980 taaaatataattaatgatggtggaaaccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccaattattttg 2230079  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
     |||||||||||||| |||||||    
T  2230080 ccaaatggagaggatgttcaccc 2230102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 34373828 - 34373950
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| |||||||||||||||| | |||||||||||||||||||||||        |||||||||||||||||||| ||| | | ||||||||||    
T  34373828 taaaatataattaatgatggtgggacctaattagtggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaaacacaatttattttg 34373927  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
     ||||||||||| ||||||||||    
T  34373928 ccaaatggagagaatcttcaccc 34373950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 40851782 - 40851891
Alignment:
Q  28 taatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttgtcaaatggaga 127  Q
    |||||||||| |||||||||||||||| | ||||||||||||        |||||||| ||||||||||| ||| |||||||||||||||||||| ||||    
T  40851782 taatgatggtaggacccacttagtggttgaacccaccatctattttttgtgtctatctttctccaacttgcaaaactccatttattttgtcaaattgaga 40851881  T
Q  128 ggatcttcac 137  Q
    ||||||||||    
T  40851882 ggatcttcac 40851891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 46167390 - 46167509
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| |||| ||||| ||| |||||||||||||||||||||||| ||        |||||||||||||||||||  ||| ||||||||||||||    
T  46167390 taaaatataattaataatggtaggatccacttagtggtaggacccaccatatattttttgtgtctatctctctccaacttacaaaactccatttattttg 46167489  T
Q  117 tcaaatggagaggatcttca 136  Q
      ||||||||||||| ||||    
T  46167490 ctaaatggagaggatgttca 46167509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 48084812 - 48084941
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacccaccatcta-nnnnnnnngtctatctctctccaacttgtaaatctccattta 111  Q
    ||||||||| |||| |||||||| |||||||||||||||||| ||||||||||||||         ||||||||||| |||| ||| ||| ||| |||||    
T  48084812 aaaataaaaaataattaatgatgatgggacccacttagtggttggacccaccatctattcttttgtgtctatctctccccaaattgcaaaactcaattta 48084911  T
Q  112 ttttgtcaaatggagaggatcttcacccgt 141  Q
    ||||  ||||||||||||||||| ||||||    
T  48084912 ttttagcaaatggagaggatcttaacccgt 48084941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 34373663 - 34373611
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatcta 69  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34373663 taaaatataattaatgatggtgggacccacttagtggtaggacccaccatcta 34373611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 24647905 - 24647957
Alignment:
Q  87 tctccaacttgtaaatctccatttattttgtcaaatggagaggatcttcaccc 139  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  24647905 tctccaacttgcaaaactccatttattttgtcaaatggagaggatcttcaccc 24647957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 12402963 - 12403061
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttatttt 115  Q
    |||||||||| |||| |||||||||| ||||||||||||| | ||||||||||         ||||||||||||||||||| ||| ||| |||||||||    
T  12402963 taaaatataattaataatggtgggactcacttagtggtagaatccaccatctaatttttatatctatctctctccaacttgcaaaactctatttatttt 12403061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 40810438 - 40810382
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacccaccatcta 69  Q
    ||||||||| |||| |||||||| ||||||||||||||||||  |||||||||||||    
T  40810438 aaaataaaaaataattaatgatgatgggacccacttagtggttagacccaccatcta 40810382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 42613077 - 42613125
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccacca 65  Q
    ||||| |||| ||||||||||||||||||||||||| ||||||||||||    
T  42613077 taaaaaataattaatgatggtgggacccacttagtgataggacccacca 42613125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 550894 - 550842
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatcta 69  Q
    |||||||||| |||| ||||||||||||||||| || ||||| ||||||||||    
T  550894 taaaatataaataataatggtgggacccacttaatgataggatccaccatcta 550842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 31523746 - 31523698
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccacca 65  Q
    ||||| |||| ||||||||||||||||||||||||  ||||||||||||    
T  31523746 taaaaaataattaatgatggtgggacccacttagtaataggacccacca 31523698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 49679348 - 49679304
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggaccc 61  Q
    ||||| |||| |||||||||||||||||| |||||| ||||||||    
T  49679348 taaaaaataattaatgatggtgggacccatttagtgataggaccc 49679304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 50294145 - 50294019
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttat 112  Q
    |||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||        |||||||||||||||||||| ||||||||||||||    
T  50294145 aaaataaaatataattaatgatggtaggatccacttagtggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaatctccatttat 50294046  T
Q  113 tttgtcaaatggagaggatcttcaccc 139  Q
    |||| |||||| |||||||||||||||    
T  50294045 tttgccaaatgaagaggatcttcaccc 50294019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 48327235 - 48327110
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttat 112  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||        |||||||||||||||||||| ||||||||||||||    
T  48327235 aaaataaaatataattaatgatggtgg-acccacttagtggtaggactcaccatctattttttttgtctatctctctccaacttgcaaatctccatttat 48327137  T
Q  113 tttgtcaaatggagaggatcttcaccc 139  Q
    |||| |||||||||| |||||||||||    
T  48327136 tttgccaaatggagatgatcttcaccc 48327110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 50484383 - 50484505
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| |||||| |||||||||||||||||||| | ||||||||||||        |||||||||||||||||||| ||| ||||||||||||||    
T  50484383 taaaatataattaatgacggtgggacccacttagtggttgtacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttg 50484482  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
     ||||||||||||||||||||||    
T  50484483 ccaaatggagaggatcttcaccc 50484505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 12151764 - 12151887
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||        |||| ||||||||||||| | ||| ||||||||||||||    
T  12151764 taaaatataattaatgatggtgggacccacttagtggtaggacccacaatctattttttgtgtctttctctctccaactggcaaaactccatttattttg 12151863  T
Q  117 tcaaatggagaggatcttcacccg 140  Q
     |||||||||| ||||||||||||    
T  12151864 ccaaatggagaagatcttcacccg 12151887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 40328275 - 40328396
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||        |||||  ||||||||| ||| ||| ||||||||||||||    
T  40328275 taaaatataactaatgatggtggaacccacttagtggtgggacccaccatcta-tttttgtgtcta--tctctccaatttgcaaaactccatttattttg 40328371  T
Q  117 tcaaatggagaggatcttcacccgt 141  Q
     |||||||||||||||||| |||||    
T  40328372 ccaaatggagaggatcttcgcccgt 40328396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 23862037 - 23861908
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtagga---cccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatt 109  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||    ||||||||||        |||||||||||||||||||| ||| || ||||    
T  23862037 aaaataaaatataattaatgatggtgggatccacttagtggtaggattcaccaccatctattttttgtgtctatctctctccaacttgcaaaacttcatt 23861938  T
Q  110 tattttgtcaaatggagaggatcttcaccc 139  Q
    |||||||  |||| |||||||| |||||||    
T  23861937 tattttgctaaatagagaggatattcaccc 23861908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 12380894 - 12380833
Alignment:
Q  78 gtctatctctctccaacttgtaaatctccatttattttgtcaaatggagaggatcttcaccc 139  Q
    |||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||    
T  12380894 gtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatcttcaccc 12380833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 12384961 - 12384900
Alignment:
Q  78 gtctatctctctccaacttgtaaatctccatttattttgtcaaatggagaggatcttcaccc 139  Q
    |||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||    
T  12384961 gtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatcttcaccc 12384900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 24977233 - 24977289
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacccaccatcta 69  Q
    |||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||    
T  24977233 aaaataaaatataactaatgattgtggaacccacttagtggtaggatccaccatcta 24977289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 45978064 - 45978124
Alignment:
Q  79 tctatctctctccaacttgtaaatctccatttattttgtcaaatggagaggatcttcaccc 139  Q
    ||||||||||||||||||| ||| ||||||||||||| |||||| ||||||||||||||||    
T  45978064 tctatctctctccaacttgcaaaactccatttattttatcaaatagagaggatcttcaccc 45978124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 39426207 - 39426317
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    ||||| |||| ||||||| |||||||||| ||||||||||||||||| |||||        |||||||||||||||| ||||  |  ||||||||||||     
T  39426207 taaaaaataattaatgatagtgggacccaattagtggtaggacccactatctattttatgtgtctatctctctccaaattgtgtacttccatttatttta 39426306  T
Q  117 tcaaatggaga 127  Q
    |||||||||||    
T  39426307 tcaaatggaga 39426317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 139
Target Start/End: Complemental strand, 7840739 - 7840635
Alignment:
Q  35 ggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttgtcaaatggagaggatctt 134  Q
    |||||||||| |||| |||||||||||| ||||||        |||||||||||||||||||  ||| ||||||||||| || |||||| | ||||||||    
T  7840739 ggtgggacccgcttaatggtaggacccatcatctatttcttgtgtctatctctctccaacttacaaaactccatttattctgccaaatgaataggatctt 7840640  T
Q  135 caccc 139  Q
    |||||    
T  7840639 caccc 7840635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 12380988 - 12380936
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatcta 69  Q
    |||||||||| ||||||||||||||| ||||||||||||| ||||||||||||    
T  12380988 taaaatataattaatgatggtgggactcacttagtggtagaacccaccatcta 12380936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 12385055 - 12385003
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatcta 69  Q
    |||||||||| ||||||||||||||| ||||||||||||| ||||||||||||    
T  12385055 taaaatataattaatgatggtgggactcacttagtggtagaacccaccatcta 12385003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 18976386 - 18976258
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnn-gtctatctctctccaacttgtaaatctccattta 111  Q
    ||||||||| |||| |||||||| ||||||| ||||| |||| ||| ||||||||||         |||||||||||||||| ||| ||| ||| |||||    
T  18976386 aaaataaaa-ataattaatgatgatgggacctacttaatggttggatccaccatctattcttttgtgtctatctctctccaaattgcaaaactcaattta 18976288  T
Q  112 ttttgtcaaatggagaggatcttcacccgt 141  Q
    ||||  ||||||||||||||||| ||||||    
T  18976287 ttttagcaaatggagaggatcttaacccgt 18976258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 46608455 - 46608409
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccac 63  Q
    ||||| |||| ||||||||||||| ||||||||||||||||||||||    
T  46608455 taaaaaataattaatgatggtgggtcccacttagtggtaggacccac 46608409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 52280117 - 52280069
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccacca 65  Q
    ||||| |||| |||||||||||||| |||||||||| ||||||||||||    
T  52280117 taaaaaataattaatgatggtgggatccacttagtgataggacccacca 52280069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 5047463 - 5047418
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtagga 58  Q
    |||||| || |||| ||||||||||||||||||| |||||||||||    
T  5047463 aaaatataaaataattaatgatggtgggacccacatagtggtagga 5047418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 6948899 - 6948862
Alignment:
Q  28 taatgatggtgggacccacttagtggtaggacccacca 65  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  6948899 taatgatggtgggatccacttagtgataggacccacca 6948862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 1228557 - 1228493
Alignment:
Q  78 gtctatctctctccaacttgtaaatctccatttattttgtcaaatggagaggatcttcacccgtc 142  Q
    |||| ||||||||||| ||| ||| |||||||||||||   ||||| |||||||||| |||||||    
T  1228557 gtctgtctctctccaaattgcaaaactccatttattttagtaaatgaagaggatcttaacccgtc 1228493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 24413354 - 24413310
Alignment:
Q  23 ataactaatgatggtgggacccacttagtggtaggacccaccatc 67  Q
    |||| |||||||||||||||||| ||| || ||||||||||||||    
T  24413354 ataattaatgatggtgggacccatttaatgataggacccaccatc 24413310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 208060 - 208182
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||        || ||||||||||||||||| ||| ||||||||||||||    
T  208060 taaaatataattaatgatgatgggacccacttagtggtaggacccaccatctattttttgtgtttatctctctccaacttgcaaaactccatttattttg 208159  T
Q  117 tcaaatggagaggatcttcaccc 139  Q
     ||||||||||||||||||||||    
T  208160 ccaaatggagaggatcttcaccc 208182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 16479 - 16353
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttat 112  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||        |||||||||||||||||||| ||| ||||||||||    
T  16479 aaaataaaatataattaatgatgatgggacccacttagtggtaggacccaccatttattttttgtgtctatctctctccaacttgcaaaactccatttat 16380  T
Q  113 tttgtcaaatggagaggatcttcaccc 139  Q
    |||| | || |||||||||||||||||    
T  16379 tttgcctaacggagaggatcttcaccc 16353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 139
Target Start/End: Complemental strand, 9276 - 9157
Alignment:
Q  20 aatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttgtca 119  Q
    ||||||| |||||||||||| | |||||||||||| ||||||||||||||        |||||||||||||||||||| |||||||||||||||||| ||    
T  9276 aatataattaatgatggtggaatccacttagtggttggacccaccatctattttctgtgtctatctctctccaacttgcaaatctccatttattttgcca 9177  T
Q  120 aatggagaggatcttcaccc 139  Q
    |||||||| |||||||||||    
T  9176 aatggagatgatcttcaccc 9157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 7140 - 7271
Alignment:
Q  13 aaaataaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctcc----at 108  Q
    |||||||||||||| |||||||||||| ||||||||| | |||||||||||||||||        |||||||||||||||||||| ||| ||||    ||    
T  7140 aaaataaaatataattaatgatggtggaacccacttaatagtaggacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttat 7239  T
Q  109 ttattttgtcaaatggagaggatcttcacccg 140  Q
    |||||||| |||||||||||||||||||||||    
T  7240 ttattttgccaaatggagaggatcttcacccg 7271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 13738 - 13799
Alignment:
Q  78 gtctatctctctccaacttgtaaatctccatttattttgtcaaatggagaggatcttcaccc 139  Q
    |||||||||||||||||| | ||| ||| |||||||||| |||||||||| |||||||||||    
T  13738 gtctatctctctccaactagcaaaactctatttattttgccaaatggagaagatcttcaccc 13799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 73874 - 73817
Alignment:
Q  78 gtctatctctctccaacttgtaaatctccatttattttgtcaaatggagaggatcttc 135  Q
    |||||||||||||||||||| ||| | |||||||||||| ||||| ||||||||||||    
T  73874 gtctatctctctccaacttgcaaaacaccatttattttgccaaatagagaggatcttc 73817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 17384 - 17339
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggaccca 62  Q
    ||||| |||| ||||||||||||||||||||||||| |||||||||    
T  17384 taaaaaataattaatgatggtgggacccacttagtgataggaccca 17339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 6513 - 6396
Alignment:
Q  17 taaaatataactaatgatggtgggacccacttagtggtaggacccaccatctannnnnnnngtctatctctctccaacttgtaaatctccatttattttg 116  Q
    |||||||||| |||||||||| | ||||| ||||| |||||||||||||||||        |||| ||||| ||||||||| |||   |||||||||||     
T  6513 taaaatataattaatgatggttgtacccatttagttgtaggacccaccatctattttttgtgtctgtctctttccaacttgcaaaatcccatttatttta 6414  T
Q  117 tcaaatggagaggatctt 134  Q
      |||| |||||||||||    
T  6413 cgaaatagagaggatctt 6396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0664 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 4768 - 4731
Alignment:
Q  28 taatgatggtgggacccacttagtggtaggacccacca 65  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  4768 taatgatggtgggatccacttagtgataggacccacca 4731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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