View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1916_high_2 (Length: 519)
Name: NF1916_high_2
Description: NF1916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1916_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 43231926 - 43231490
Alignment:
| Q |
1 |
tttcctttccaattgtttgtcgacatcattcaaaacattcaaattatttgaaacggcattgagcacctttcaagatatacacacttgggaaatgataaat |
100 |
Q |
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| T |
43231926 |
tttcctttccaattgtttgtcgacatcattcgaaacattcaaattatttgaaacggcattgagcacctttcaagctatacacacttgggaaatgataaat |
43231827 |
T |
|
| Q |
101 |
aaaaccaaaagttatttcattaatgcccaacaaatggatcttactggttcgtcaacctgataatttccactagaatagaacnnnnnnnngctaattatag |
200 |
Q |
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| T |
43231826 |
aaaaccaaaagttatttcattaatgcccaacaaatggatcttactggctcgtcaacctgataatttccactagaatagaacttttttttgctaattatag |
43231727 |
T |
|
| Q |
201 |
cactgttgccacactttattctcctcctctcctttttctttttccttgaccaaatccattacctcttgggttgatgcatgtatttacttgattcccatgc |
300 |
Q |
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| T |
43231726 |
cactgttgccacactttattctcctcctc-------------tccttgaccaaatccattacctcct---------catatatttacttgattcccacgc |
43231649 |
T |
|
| Q |
301 |
ttaactcttcatcctttacattgacatcttaataaattcgattttgtttgtttaatttgctgaatcgatgtgttggctggttgtttctgtcgggttgttg |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
43231648 |
ttaactcttcatcctttacattgacatcttaataaattcgattttgtttg-----tttgctgaatcgatgcgttggctggttgtttctgtcgtgttgttg |
43231554 |
T |
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| Q |
401 |
attctttaaatactcgtgtattgttcaaggtatgtttgtttggcttttcatttgaagcatttgg |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43231553 |
attctttaaatactcgtgtattgttcaaggtatgtttgtttggcttttgatttgaagcatttgg |
43231490 |
T |
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