View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1916_high_24 (Length: 252)
Name: NF1916_high_24
Description: NF1916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1916_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 44975706 - 44975951
Alignment:
| Q |
1 |
aattctgatccttacttttgtatgaactggttttgttatttcatttgattttctataaagtgtataaatatcatcatgatctgaaatacatgcatgcagc |
100 |
Q |
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| T |
44975706 |
aattctgatccttacttttgtatgaactggttttgttatttcatttgattttctataaagtgtataaatatcatcatgatctgaaatacatgcatgcggc |
44975805 |
T |
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| Q |
101 |
cacaaaca--aagtttgtttcaaagtgagaaagttgactctttcttctctcctctttggttgtgatgttaaatctcattaattctttatttggaatatat |
198 |
Q |
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|| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44975806 |
cataaacataaagtttgtttcaaagttagaaagttgactctttcttctctcctctttggttgtgatgttaaatctcattaattctttatttggaatatat |
44975905 |
T |
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| Q |
199 |
gttgttttggatgatttggtattattatgggatatttcatattctt |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44975906 |
gttgttttggatgatttggtattattatgggatatttcattttctt |
44975951 |
T |
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