View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1916_high_28 (Length: 238)
Name: NF1916_high_28
Description: NF1916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1916_high_28 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 48671961 - 48672181
Alignment:
| Q |
18 |
gaataaagataagcaaagacttaattgaaattggtggcgaagctctcaaaactaacatcacaacactaggaccattggtcctacccttttcagaacagct |
117 |
Q |
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| T |
48671961 |
gaataaagataagcaaagacttaattgaaattggtggcgaagctctcaaaactaacatcacaacactaggaccattggtcctacccttttcagaacagct |
48672060 |
T |
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| Q |
118 |
tattttctttgctacattagtgtggaggaactggtttggtggtggaaaatctgataaaaattcaccatcatcaaacaagccatacattcctaactacaaa |
217 |
Q |
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| T |
48672061 |
tattttctttgctacattagtgtggaggaactggtttggtggtggaaaatctgataaaaattcaccatcatcaaacaagccatacattcctaactacaaa |
48672160 |
T |
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| Q |
218 |
ctagcttttgagcatttttgt |
238 |
Q |
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| T |
48672161 |
ctagcttttgagcatttttgt |
48672181 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 102
Target Start/End: Original strand, 15239322 - 15239368
Alignment:
| Q |
56 |
gaagctctcaaaactaacatcacaacactaggaccattggtcctacc |
102 |
Q |
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| T |
15239322 |
gaagcactcaaaacaaacatcacaacattaggaccattagtcctacc |
15239368 |
T |
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