View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1916_high_3 (Length: 508)
Name: NF1916_high_3
Description: NF1916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1916_high_3 |
 | |
|
| [»] scaffold0478 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0478 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: scaffold0478
Description:
Target: scaffold0478; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 15 - 498
Target Start/End: Complemental strand, 12225 - 11742
Alignment:
| Q |
15 |
tcaggcacttgctggaccgaaagactacaagcttactcaacttcctccgaaagttgtgatggggaaatcggttcgagtcaaaatcagacaaaccgaatat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
12225 |
tcaggcacttgctggaccgaaagactacaagcttactcaacttcctccgaaagttgtgatggggaaatccgttcgagtcaaaatcacacaaaccgaatat |
12126 |
T |
|
| Q |
115 |
gaatctgggctcattgactgtagcagcaacattcatggaagattaacacttcgcagaggtgatactcctttatctactatggctttaacgctgcaattga |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
12125 |
gaatctgggctcattgactgtagcagcaacattcatggaaggttaacacttcgcagaggtgatactcctttatctattatggctttaaagctgcaattga |
12026 |
T |
|
| Q |
215 |
gcaatatgtggccaaatatacataattgggatataactcctctaggaaagggcttctttgagtttcatttcaacactgtggaggatatgcgcagagtttg |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12025 |
gcaatatgtggccaaatatacataattgggatataactcctctaggaaagggcttctttgagtttcatttcaacactgtggaggatatgcgtagagtttg |
11926 |
T |
|
| Q |
315 |
ggcaatgggggttgtgcaattgaaccctggtctgatgcgattctatcgttggtctagtgatttttcaatacagacacaggctcaaactcatgcccaaata |
414 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
11925 |
ggcaatgggggttgtgcaattgaaccttggtctgatgcgattctatcgttggtctagtgatttttcaatatagagacaggctcaaactcatgcccaaata |
11826 |
T |
|
| Q |
415 |
tgggttcgtttcttacacttgcctcaggagtattggcgtaaccagactctattggaaatagcatccggactcggcacacctttg |
498 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11825 |
tgggttcgtttcttacacttgcctcagaagtattggcgtaagcagactctattggaaataacatccggactcggcacacctttg |
11742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 25 - 498
Target Start/End: Original strand, 26153288 - 26153760
Alignment:
| Q |
25 |
gctggaccgaaagactacaagcttactcaacttcctccgaaagttgtgatggggaaatcggttcgagtcaaaatcagacaaaccgaatatgaatctgggc |
124 |
Q |
| |
|
||||| |||||||| || |||||||||||||||||||||||||||||||||||||| | |||| || ||||||| |||| | ||||| | | |||||| |
|
|
| T |
26153288 |
gctggtccgaaagattatcagcttactcaacttcctccgaaagttgtgatggggaaaaccattcgcgttaaaatcatacaatctgaatacgcagctgggc |
26153387 |
T |
|
| Q |
125 |
tcattgactgtagcagcaacattcatggaagattaacacttcgcagaggtgatactcctttatctactatggctttaacgctgcaattgagcaatatgtg |
224 |
Q |
| |
|
| |||| || |||||||| || ||||| | || || || | || ||||||||| |||||||||||||||||||| | | | ||||||| ||| |||| |
|
|
| T |
26153388 |
acgttgattgcagcagcaatatccatggcgg-ttgacgctgcacaaaggtgatacccctttatctactatggctttgaagttaaaattgagtaatttgtg |
26153486 |
T |
|
| Q |
225 |
gccaaatatacataattgggatataactcctctaggaaagggcttctttgagtttcatttcaacactgtggaggatatgcgcagagtttgggcaatgggg |
324 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
26153487 |
gccaaacatacataattgggatataactccactaggaaagggcttttttgaatttcatttcaatactgttgaggatatgcgaagagtttgggcaatgggg |
26153586 |
T |
|
| Q |
325 |
gttgtgcaattgaaccctggtctgatgcgattctatcgttggtctagtgatttttcaatacagacacaggctcaaactcatgcccaaatatgggttcgtt |
424 |
Q |
| |
|
|||||| | |||||||| ||| |||||| ||||||| ||||||||||||||||||| | |||| ||||||||||||| || |||||||||||||| ||| |
|
|
| T |
26153587 |
gttgtgaacttgaaccccggtttgatgctattctattgttggtctagtgatttttctacacaggcacaggctcaaacacacgcccaaatatgggtctgtt |
26153686 |
T |
|
| Q |
425 |
tcttacacttgcctcaggagtattggcgtaaccagactctattggaaatagcatccggactcggcacacctttg |
498 |
Q |
| |
|
||||||||||||| || |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26153687 |
tcttacacttgccccatgagtattggcgtaagcagactttattggaaatagcatccggactcggcacacctttg |
26153760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 44 - 454
Target Start/End: Complemental strand, 21592482 - 21592078
Alignment:
| Q |
44 |
agcttactcaacttcctccgaaagttgtgatggggaaatcggttcgagtcaaaatcagacaaaccgaatatgaatctgggctcattgactgtagcagcaa |
143 |
Q |
| |
|
||||| || |||||| |||||| ||||| ||||||||| | || || | ||||||| ||| | |||| |||| ||| || |||||||| || ||||| |
|
|
| T |
21592482 |
agctttctaaacttcatccgaaggttgttatggggaaaactgtacggataaaaatcacccaatctaaatacgaatttggactgattgactgcagtagcaa |
21592383 |
T |
|
| Q |
144 |
cattcatggaagattaacacttcgcagaggtgatactcctttatctactatggctttaacgctgcaattgagcaatatgtggccaaatatacataattgg |
243 |
Q |
| |
|
|| |||| || || ||||| |||| |||||||| |||||||| ||||||||||| | | | ||||||| ||| | |||||||| || | || ||| |
|
|
| T |
21592382 |
tatcgatggcaggttgacactgcgcaagggtgatacccctttatccactatggctttgaagacgaaattgagaaatttatggccaaacattctcaactgg |
21592283 |
T |
|
| Q |
244 |
gatataactcctctaggaaagggcttctttgagtttcatttcaacactgtggaggatatgcgcagagtttgggcaatgggggttgtgcaattgaaccctg |
343 |
Q |
| |
|
||| | || | | |||||||| || ||||| ||||| ||||| | || ||||||||||| |||||| ||| ||||||||||| | | || || | |
|
|
| T |
21592282 |
gatcttacatcattgggaaagggtttttttgaatttcacttcaattccgttgaggatatgcgtcgagtttaggctatgggggttgttaacataaaaccag |
21592183 |
T |
|
| Q |
344 |
gtctgatgcgattctatcgttggtctagtgatttttcaatacagacacaggctcaaactcatgcccaaatatgggttcgtttcttacacttgcctcagga |
443 |
Q |
| |
|
|| ||||| |||||| | ||||||||| | |||| || |||||| |||||||||||| || || ||||||||||| ||||||||||||||||| || |
|
|
| T |
21592182 |
gtttgatgagattcttttgttggtctaattatttctc--tacaga----ggctcaaactcacgctcagatatgggttcgattcttacacttgcctcaaga |
21592089 |
T |
|
| Q |
444 |
gtattggcgta |
454 |
Q |
| |
|
||||||||||| |
|
|
| T |
21592088 |
gtattggcgta |
21592078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 324
Target Start/End: Original strand, 43688682 - 43688740
Alignment:
| Q |
266 |
gcttctttgagtttcatttcaacactgtggaggatatgcgcagagtttgggcaatgggg |
324 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||| | | ||||||| |||||| |
|
|
| T |
43688682 |
gcttctttgagttccatttcaacacagtggaggatatgcggaaaatttgggctatgggg |
43688740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 324
Target Start/End: Original strand, 52314318 - 52314377
Alignment:
| Q |
265 |
ggcttctttgagtttcatttcaacactgtggaggatatgcgcagagtttgggcaatgggg |
324 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||| | | | ||||||| |||||| |
|
|
| T |
52314318 |
ggcttctttgagttccatttcaacacagtggaggatatgaggaaaatttgggctatgggg |
52314377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University