View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1916_high_31 (Length: 226)
Name: NF1916_high_31
Description: NF1916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1916_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 22815673 - 22815745
Alignment:
| Q |
18 |
acataaacataattatcaaacaggaactttgaatttccatacctgaaccaccttcaccatctttcatcctctg |
90 |
Q |
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| T |
22815673 |
acataaacataattatcaaacatgaactttgaatttccatacctgaaccaccttcaccatctttcatcctctg |
22815745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 22827980 - 22828050
Alignment:
| Q |
19 |
cataaacataattatcaaacaggaactttgaatttccatacctgaaccaccttcaccatctttcatcctct |
89 |
Q |
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| T |
22827980 |
cataaacataattatcaaacaaaaactttgaatttccatacctgaaccacctccaccatctttcatcctct |
22828050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 22796826 - 22796897
Alignment:
| Q |
19 |
cataaacataattatcaaacaggaactttgaatttccatacctgaaccaccttcaccatctttcatcctctg |
90 |
Q |
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| T |
22796826 |
cataaacataattatcaaactagaactttgaatttccatacctgaaacacctccaccatctttcatcctctg |
22796897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 22815811 - 22815869
Alignment:
| Q |
156 |
cagcctcatcaatacacgttccagaccctaatttatctttcacaacacctccattcttc |
214 |
Q |
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| T |
22815811 |
cagcctcatcaatacacgttccagaccctaatttatctttcacaacaccaccattcttc |
22815869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 22838434 - 22838490
Alignment:
| Q |
34 |
caaacaggaactttgaatttccatacctgaaccaccttcaccatctttcatcctctg |
90 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22838434 |
caaacaagaactttgaatttccatacctgaaccacctccaccatctttcatcctctg |
22838490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 22852458 - 22852529
Alignment:
| Q |
19 |
cataaacataattatcaaacaggaactttgaatttccatacctgaaccaccttcaccatctttcatcctctg |
90 |
Q |
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|||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
22852458 |
cataaacataatcatcaaacaaaaacttagaatttccatacctgaaccacctccaccatcattcatcctctg |
22852529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 22796963 - 22797021
Alignment:
| Q |
156 |
cagcctcatcaatacacgttccagaccctaatttatctttcacaacacctccattcttc |
214 |
Q |
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||||||||||||||||| ||| |||||||||||| |||||||||||||| ||||||||| |
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| T |
22796963 |
cagcctcatcaatacaccttcgagaccctaatttctctttcacaacaccaccattcttc |
22797021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 5621129 - 5621058
Alignment:
| Q |
19 |
cataaacataattatcaaacaggaactttgaatttccatacctgaaccaccttcaccatctttcatcctctg |
90 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
5621129 |
cataaacataattatcaaactagaactttgaatttccatacctgaaacacctccaccatctttcatcctctg |
5621058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 5620992 - 5620934
Alignment:
| Q |
156 |
cagcctcatcaatacacgttccagaccctaatttatctttcacaacacctccattcttc |
214 |
Q |
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||||||||||||||||| ||| |||||||||||| |||||||||||||| ||||||||| |
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| T |
5620992 |
cagcctcatcaatacaccttcgagaccctaatttctctttcacaacaccaccattcttc |
5620934 |
T |
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