View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1916_high_33 (Length: 217)
Name: NF1916_high_33
Description: NF1916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1916_high_33 |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 5 - 193
Target Start/End: Original strand, 21195496 - 21195684
Alignment:
| Q |
5 |
ttgatcctaggctctctgcttcaaacccatcaagccgtggagaatttgtgaaaggaccatcagtatacatggttacagttgacttgactattactccaat |
104 |
Q |
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| T |
21195496 |
ttgatcctaagctatctgcttcaaacgcatcaagtcgtggagaatttgcaaaagggccatcagtatacatggtgacagttgacttggctattactccaat |
21195595 |
T |
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| Q |
105 |
gttgtccttcactgctatatcacatttaaatagttcaaatgttcctctgaatgatgtggatgaaaaagttgttacaattggtcagaagg |
193 |
Q |
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| T |
21195596 |
gtcatccttcactgctatatcacatttaaatagttcaaatgtttctctaaatgatgtggaagaaagggttgttagaattggtcagaagg |
21195684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 5 - 185
Target Start/End: Original strand, 21200742 - 21200923
Alignment:
| Q |
5 |
ttgatcctaggctctctgcttcaaac-ccatcaagccgtggagaatttgtgaaaggaccatcagtatacatggttacagttgacttgactattactccaa |
103 |
Q |
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| T |
21200742 |
ttgatcctaagctatctgcttcaaacaccatcaagtcgtggagaattcgcaaaaggaccatcagtatacatggtgacagctgacttgactatcgctccat |
21200841 |
T |
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| Q |
104 |
tgttgtccttcactgctatatcacatttaaatagttcaaatgttcctctgaatgatgtggatgaaaaagttgttacaattgg |
185 |
Q |
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| T |
21200842 |
tgtcgtccttcactgctatatcacatttaaatagttcaaatgtttctctaaatgatgtggaagaaagggttgttagaattgg |
21200923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 24285267 - 24285434
Alignment:
| Q |
19 |
tctgcttcaaacccatcaagccgtggagaatttgtgaaaggaccatcagtatacatggttacagttgacttgactattactccaatgttgtccttcactg |
118 |
Q |
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| T |
24285267 |
tctgcttcaaaatcatcaagttgtggagaatttgcaaaaggaccatcagtatacatggttacagatgacttagttgtgactccaacctcatccttcaatg |
24285366 |
T |
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| Q |
119 |
ctatatcacatttaaatagttcaaatgttcctctgaatgatgtggatgaaaaagttgttacaattggt |
186 |
Q |
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| T |
24285367 |
ctatttcacatctgaagagtttaaacgttcccctatctgatgtagaggaaaaagtggttagaattggt |
24285434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 187
Target Start/End: Original strand, 10990015 - 10990161
Alignment:
| Q |
41 |
gtggagaatttgtgaaaggaccatcagtatacatggttacagttgacttgactattactccaatgttgtccttcactgctatatcacatttaaatagttc |
140 |
Q |
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| T |
10990015 |
gtggagaatttgccaaaggtccattaagatacatggtgacagatgacttggttgtgactccaatgtcgtccttcgctgcaatttcacatctgaatagttc |
10990114 |
T |
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| Q |
141 |
aaatgttcctctgaatgatgtggatgaaaaagttgttacaattggtc |
187 |
Q |
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| T |
10990115 |
aaatattcctgtatctgatgttgaggaaaaggtggttagaattggtc |
10990161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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