View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1916_high_6 (Length: 478)

Name: NF1916_high_6
Description: NF1916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1916_high_6
NF1916_high_6
[»] chr6 (16 HSPs)
chr6 (213-415)||(2433043-2433250)
chr6 (1-190)||(2586497-2586686)
chr6 (1-165)||(2620187-2620351)
chr6 (1-168)||(2432912-2433079)
chr6 (1-152)||(2572410-2572561)
chr6 (1-168)||(2677230-2677397)
chr6 (1-152)||(2448779-2448930)
chr6 (1-151)||(2599989-2600139)
chr6 (1-152)||(2644808-2644959)
chr6 (213-389)||(2677096-2677266)
chr6 (132-225)||(2677094-2677191)
chr6 (183-231)||(2588404-2588452)
chr6 (130-231)||(2433123-2433227)
chr6 (435-475)||(2213321-2213361)
chr6 (201-249)||(2677155-2677203)
chr6 (441-477)||(10278475-10278511)
[»] chr8 (7 HSPs)
chr8 (435-478)||(45396585-45396628)
chr8 (445-475)||(5728562-5728592)
chr8 (441-475)||(44019573-44019607)
chr8 (444-477)||(11709008-11709041)
chr8 (436-477)||(21557455-21557496)
chr8 (438-478)||(19778086-19778126)
chr8 (441-477)||(44602619-44602655)
[»] chr7 (4 HSPs)
chr7 (1-48)||(17872688-17872735)
chr7 (435-478)||(48527211-48527254)
chr7 (433-478)||(46987107-46987152)
chr7 (441-477)||(33610928-33610964)
[»] chr2 (8 HSPs)
chr2 (435-477)||(41778941-41778983)
chr2 (439-478)||(4056811-4056850)
chr2 (435-477)||(20455913-20455955)
chr2 (444-478)||(40799600-40799634)
chr2 (441-478)||(12124705-12124742)
chr2 (433-478)||(24393266-24393311)
chr2 (433-478)||(28771603-28771648)
chr2 (441-477)||(33064008-33064044)
[»] chr5 (9 HSPs)
chr5 (441-478)||(32806380-32806417)
chr5 (435-475)||(18278256-18278296)
chr5 (433-476)||(35109423-35109466)
chr5 (435-477)||(17046356-17046397)
chr5 (435-477)||(28207154-28207196)
chr5 (441-478)||(8544992-8545029)
chr5 (433-478)||(16531270-16531315)
chr5 (433-473)||(11017202-11017242)
chr5 (435-475)||(32339759-32339799)
[»] chr4 (5 HSPs)
chr4 (437-478)||(25978338-25978379)
chr4 (436-478)||(19908713-19908755)
chr4 (433-478)||(29910482-29910527)
chr4 (435-476)||(42316821-42316862)
chr4 (441-477)||(2649736-2649772)
[»] chr1 (6 HSPs)
chr1 (433-478)||(38448861-38448906)
chr1 (433-478)||(1408456-1408501)
chr1 (436-477)||(4302474-4302515)
chr1 (433-478)||(6000138-6000183)
chr1 (441-478)||(9639820-9639857)
chr1 (433-478)||(47528442-47528487)
[»] scaffold0026 (1 HSPs)
scaffold0026 (435-478)||(75346-75389)
[»] chr3 (5 HSPs)
chr3 (435-478)||(8113559-8113602)
chr3 (433-473)||(14771357-14771397)
chr3 (433-477)||(19468473-19468517)
chr3 (436-476)||(46226023-46226063)
chr3 (433-473)||(51614235-51614275)


Alignment Details
Target: chr6 (Bit Score: 180; Significance: 5e-97; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 213 - 415
Target Start/End: Original strand, 2433043 - 2433250
Alignment:
Q  213 gatatgatactcaggttagtgttaattacttttgtcacattatgctattcagtattaaccaaatataatagaattttcctaggatttgatacttgggtta 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2433043 gatatgatactcaggttagtgttaattacttttgtcacattatgctattcagtattaaccaaatataatagaattttcctaggatttgatacttgggtta 2433142  T
Q  313 gtgctaattgcttttgtcattagtatgctattaaccaaatatgagtaattatgtggaatttcctaggatatgatac-----ttaggttagtgctagcttg 407  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||     |||||||||||||||||||    
T  2433143 gtgctaattgcttttgtcattaatatgctattaaccaaatatgagtagttatgtggaatttcctaggatatgatacttaggttaggttagtgctagcttg 2433242  T
Q  408 ttttgtta 415  Q
    ||||||||    
T  2433243 ttttgtta 2433250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 2586497 - 2586686
Alignment:
Q  1 agaacctgctttgtttgcaacaagcattaaggagaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaat 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||  |||||||||||||||||||||| |||    
T  2586497 agaacctgctttgtttgcaacaagcatcaaggagaatatactttttggaagagaggatgctacatttgaagatgttgtggatgctgctaaagcttctaat 2586596  T
Q  101 gctcataatttcatatcaatgttgccacaaggatatgatactcaggttagtgttgattgcttttgtcaatatgctataaacaaaatatga 190  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  2586597 gctcataatttcatttcaatgttgccacaaggatatgatactcaggttagtgttgattgcttttgtaaatatgctataaaccaaatatga 2586686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 2620187 - 2620351
Alignment:
Q  1 agaacctgctttgtttgcaacaagcattaaggagaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2620187 agaacctgctttgtttgcaacaagcattaaggagaatatactttttggaagagaggatgctacatatgaagaaattgtggatgctgctaaagcttccaat 2620286  T
Q  101 gctcataatttcatatcaatgttgccacaaggatatgatactcaggttagtgttgattgcttttg 165  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2620287 gctcataatttcatttcattgttgccacaaggatatgatactcaggttagtgttgattgcttttg 2620351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 2432912 - 2433079
Alignment:
Q  1 agaacctgctttgtttgcaacaagcattaaggagaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  2432912 agaacctgctttgtttgcaacaagcattaaggagaatatactttttggaagagaggatgctacatatgaagaaattgtggatgctgccaaagcttccaat 2433011  T
Q  101 gctcataatttcatatcaatgttgccacaaggatatgatactcaggttagtgttgattgcttttgtca 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  2433012 gctcataatttcatatcaatgttgccacaaggatatgatactcaggttagtgttaattacttttgtca 2433079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 2572561 - 2572410
Alignment:
Q  1 agaacctgctttgtttgcaacaagcattaaggagaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2572561 agaacctgctttgtttgcaacaagcattaaggagaatatactttttggaagagaggatgctacatatgaagaaattgtggatgctgctaaagcttccaat 2572462  T
Q  101 gctcataatttcatatcaatgttgccacaaggatatgatactcaggttagtg 152  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  2572461 gctcataatttcatttcattgttgccacaaggatatgatactcaggttagtg 2572410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 2677397 - 2677230
Alignment:
Q  1 agaacctgctttgtttgcaacaagcattaaggagaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaat 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||    
T  2677397 agaacctgctttgtttgcaacaagcattatggagaatatactttttggaagagaggatgctacatatgaagaaatcgtggatgctgctaaagcttctaat 2677298  T
Q  101 gctcataatttcatatcaatgttgccacaaggatatgatactcaggttagtgttgattgcttttgtca 168  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  2677297 gctcataatttcatttcaatgttgccacaaggatatgatactcaggttagtgttaattacttttgtca 2677230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 2448779 - 2448930
Alignment:
Q  1 agaacctgctttgtttgcaacaagcattaaggagaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||    
T  2448779 agaacctgctttgtttgcaacaagcattaaggagaatatactttttggaagagaggatgctacatatgaagatgttgtggatgctgctaaagcttccaat 2448878  T
Q  101 gctcataatttcatatcaatgttgccacaaggatatgatactcaggttagtg 152  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  2448879 gctcataatttcatttcattgttgccacaaggatatgatactcaggttagtg 2448930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 2600139 - 2599989
Alignment:
Q  1 agaacctgctttgtttgcaacaagcattaaggagaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| |||    
T  2600139 agaacctgctttgtttgcaacaagcattaaggagaatatactttttggaagagaggatgctacatatgaagaaattgtgaatgctgctaaaacttctaat 2600040  T
Q  101 gctcataatttcatatcaatgttgccacaaggatatgatactcaggttagt 151  Q
    |||||||||||||| ||| |||||||||||| |||||||||||||||||||    
T  2600039 gctcataatttcatttcattgttgccacaagtatatgatactcaggttagt 2599989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 2644959 - 2644808
Alignment:
Q  1 agaacctgctttgtttgcaacaagcattaaggagaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||| ||||||||||||| |||||||    
T  2644959 agaacctgctttgtttgcaacaagcattaaggagaatatactttttggaagagaggatgctacatatgaagatgttgtagatgctgctaaagtttccaat 2644860  T
Q  101 gctcataatttcatatcaatgttgccacaaggatatgatactcaggttagtg 152  Q
    |||||||||||||| ||| |||||||||||||||||||||| ||||||||||    
T  2644859 gctcataatttcatttcattgttgccacaaggatatgatacgcaggttagtg 2644808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 213 - 389
Target Start/End: Complemental strand, 2677266 - 2677096
Alignment:
Q  213 gatatgatactcaggttagtgttaattacttttgtcacattatgctattcagtattaaccaaatataatagaattttcctaggatttgatacttgggtta 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       || ||||||||||||||||||| || ||| ||||||||||||||    
T  2677266 gatatgatactcaggttagtgttaattacttttgtcacattatgctatt-------aatcaaatataatagaattttcgtaagatatgatacttgggtta 2677174  T
Q  313 gtgctaattgcttttgtcattagtatgctattaaccaaatatgagtaattatgtggaa-tttcctaggatatgatact 389  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||  |||||||||||    
T  2677173 gtgctaattgcttttgtcattaatatgctattaaccaaatatgagtaattaagtggaattttccttagatatgatact 2677096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 2677191 - 2677094
Alignment:
Q  132 gatatgatactcaggttagtgttgattgcttttgtca---atatgctataaacaaaatatgagtaatta-gtggaattttcctaagatatgatactca 225  Q
    |||||||||||  |||||||| | |||||||||||||   ||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||||||||    
T  2677191 gatatgatacttgggttagtgctaattgcttttgtcattaatatgctattaaccaaatatgagtaattaagtggaattttccttagatatgatactca 2677094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 2588404 - 2588452
Alignment:
Q  183 aaatatgagtaattagtggaattttcctaagatatgatactcaggttag 231  Q
    ||||||||||||||| ||||||||||||| ||||||||||||| |||||    
T  2588404 aaatatgagtaattactggaattttcctaggatatgatactcatgttag 2588452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 231
Target Start/End: Original strand, 2433123 - 2433227
Alignment:
Q  130 aggatatgatactcaggttagtgttgattgcttttgtc---aatatgctataaacaaaatatgagtaatta-gtggaattttcctaagatatgatactca 225  Q
    ||||| |||||||  |||||||| | ||||||||||||   |||||||||| ||| ||||||||||| ||| |||||| ||||||| ||||||||||| |    
T  2433123 aggatttgatacttgggttagtgctaattgcttttgtcattaatatgctattaaccaaatatgagtagttatgtggaa-tttcctaggatatgatactta 2433221  T
Q  226 ggttag 231  Q
    ||||||    
T  2433222 ggttag 2433227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 475
Target Start/End: Complemental strand, 2213361 - 2213321
Alignment:
Q  435 ccgggattcgaacttcggagcttgcatatattatgcattgt 475  Q
    ||||||||| ||||||||| |||||||||||||||||||||    
T  2213361 ccgggattctaacttcggaccttgcatatattatgcattgt 2213321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 2677203 - 2677155
Alignment:
Q  201 gaattttcctaagatatgatactcaggttagtgttaattacttttgtca 249  Q
    |||||||| ||||||||||||||  |||||||| ||||| |||||||||    
T  2677203 gaattttcgtaagatatgatacttgggttagtgctaattgcttttgtca 2677155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 477
Target Start/End: Complemental strand, 10278511 - 10278475
Alignment:
Q  441 ttcgaacttcggagcttgcatatattatgcattgtcc 477  Q
    |||||||||| || |||||||||||||||||||||||    
T  10278511 ttcgaacttcagatcttgcatatattatgcattgtcc 10278475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 435 - 478
Target Start/End: Complemental strand, 45396628 - 45396585
Alignment:
Q  435 ccgggattcgaacttcggagcttgcatatattatgcattgtcct 478  Q
    |||||||||||||||| || ||||||||||||||||||||||||    
T  45396628 ccgggattcgaacttcagaccttgcatatattatgcattgtcct 45396585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 445 - 475
Target Start/End: Complemental strand, 5728592 - 5728562
Alignment:
Q  445 aacttcggagcttgcatatattatgcattgt 475  Q
    |||||||||||||||||||||||||||||||    
T  5728592 aacttcggagcttgcatatattatgcattgt 5728562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 441 - 475
Target Start/End: Complemental strand, 44019607 - 44019573
Alignment:
Q  441 ttcgaacttcggagcttgcatatattatgcattgt 475  Q
    ||||||||||||| |||||||||||||||||||||    
T  44019607 ttcgaacttcggaccttgcatatattatgcattgt 44019573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 477
Target Start/End: Complemental strand, 11709041 - 11709008
Alignment:
Q  444 gaacttcggagcttgcatatattatgcattgtcc 477  Q
    |||||||||| |||||||||||||||||||||||    
T  11709041 gaacttcggaccttgcatatattatgcattgtcc 11709008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 477
Target Start/End: Complemental strand, 21557496 - 21557455
Alignment:
Q  436 cgggattcgaacttcggagcttgcatatattatgcattgtcc 477  Q
    |||||||||||| ||||| ||| |||||||||||||||||||    
T  21557496 cgggattcgaacctcggaccttacatatattatgcattgtcc 21557455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 478
Target Start/End: Complemental strand, 19778126 - 19778086
Alignment:
Q  438 ggattcgaacttcggagcttgcatatattatgcattgtcct 478  Q
    ||||||||||  |||| ||||||||||||||||||||||||    
T  19778126 ggattcgaaccccggaccttgcatatattatgcattgtcct 19778086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 477
Target Start/End: Complemental strand, 44602655 - 44602619
Alignment:
Q  441 ttcgaacttcggagcttgcatatattatgcattgtcc 477  Q
    |||||||| |||| |||||||||||||||||||||||    
T  44602655 ttcgaactccggaccttgcatatattatgcattgtcc 44602619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 17872735 - 17872688
Alignment:
Q  1 agaacctgctttgtttgcaacaagcattaaggagaatatactttttgg 48  Q
    |||||||||||| ||||||||||||||||| ||||||||| |||||||    
T  17872735 agaacctgctttatttgcaacaagcattaaagagaatataatttttgg 17872688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 435 - 478
Target Start/End: Complemental strand, 48527254 - 48527211
Alignment:
Q  435 ccgggattcgaacttcggagcttgcatatattatgcattgtcct 478  Q
    |||||||||||||| |||| ||||||||||||||||||||||||    
T  48527254 ccgggattcgaactccggaccttgcatatattatgcattgtcct 48527211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 478
Target Start/End: Complemental strand, 46987152 - 46987107
Alignment:
Q  433 gtccgggattcgaacttcggagcttgcatatattatgcattgtcct 478  Q
    ||||||| |||||||  |||| ||||||||||||||||||||||||    
T  46987152 gtccggggttcgaaccccggaccttgcatatattatgcattgtcct 46987107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 477
Target Start/End: Original strand, 33610928 - 33610964
Alignment:
Q  441 ttcgaacttcggagcttgcatatattatgcattgtcc 477  Q
    |||||||| |||| |||||||||||||||||||||||    
T  33610928 ttcgaactccggaccttgcatatattatgcattgtcc 33610964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 477
Target Start/End: Original strand, 41778941 - 41778983
Alignment:
Q  435 ccgggattcgaacttcggagcttgcatatattatgcattgtcc 477  Q
    ||||||||||||| ||||| |||||||||||||||||||||||    
T  41778941 ccgggattcgaacctcggaccttgcatatattatgcattgtcc 41778983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 478
Target Start/End: Complemental strand, 4056850 - 4056811
Alignment:
Q  439 gattcgaacttcggagcttgcatatattatgcattgtcct 478  Q
    |||||||||| |||| ||||||||||||||||||||||||    
T  4056850 gattcgaactccggaccttgcatatattatgcattgtcct 4056811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 435 - 477
Target Start/End: Complemental strand, 20455955 - 20455913
Alignment:
Q  435 ccgggattcgaacttcggagcttgcatatattatgcattgtcc 477  Q
    |||||||||||||  |||| |||||||||||||||||||||||    
T  20455955 ccgggattcgaaccccggaccttgcatatattatgcattgtcc 20455913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 444 - 478
Target Start/End: Original strand, 40799600 - 40799634
Alignment:
Q  444 gaacttcggagcttgcatatattatgcattgtcct 478  Q
    |||||||||| ||||||||||||||||||||||||    
T  40799600 gaacttcggaacttgcatatattatgcattgtcct 40799634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 478
Target Start/End: Complemental strand, 12124742 - 12124705
Alignment:
Q  441 ttcgaacttcggagcttgcatatattatgcattgtcct 478  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  12124742 ttcgaactccggaccttgcatatattatgcattgtcct 12124705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 478
Target Start/End: Complemental strand, 24393311 - 24393266
Alignment:
Q  433 gtccgggattcgaacttcggagcttgcatatattatgcattgtcct 478  Q
    ||||||| ||||||| || || ||||||||||||||||||||||||    
T  24393311 gtccggggttcgaacctcagaccttgcatatattatgcattgtcct 24393266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 478
Target Start/End: Complemental strand, 28771648 - 28771603
Alignment:
Q  433 gtccgggattcgaacttcggagcttgcatatattatgcattgtcct 478  Q
    ||||||| |||||||  |||| ||||||||||||||||||||||||    
T  28771648 gtccggggttcgaaccgcggatcttgcatatattatgcattgtcct 28771603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 477
Target Start/End: Complemental strand, 33064044 - 33064008
Alignment:
Q  441 ttcgaacttcggagcttgcatatattatgcattgtcc 477  Q
    |||||||| |||| |||||||||||||||||||||||    
T  33064044 ttcgaactccggaccttgcatatattatgcattgtcc 33064008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 441 - 478
Target Start/End: Complemental strand, 32806417 - 32806380
Alignment:
Q  441 ttcgaacttcggagcttgcatatattatgcattgtcct 478  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  32806417 ttcgaacttcggaccttgcatatattatgcattgtcct 32806380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 475
Target Start/End: Original strand, 18278256 - 18278296
Alignment:
Q  435 ccgggattcgaacttcggagcttgcatatattatgcattgt 475  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  18278256 ccgggattcgaatttcggaccttgcatatattatgcattgt 18278296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 476
Target Start/End: Complemental strand, 35109466 - 35109423
Alignment:
Q  433 gtccgggattcgaacttcggagcttgcatatattatgcattgtc 476  Q
    ||||||||||||||| ||||| ||||||||||||||| ||||||    
T  35109466 gtccgggattcgaacctcggaccttgcatatattatgtattgtc 35109423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 435 - 477
Target Start/End: Complemental strand, 17046397 - 17046356
Alignment:
Q  435 ccgggattcgaacttcggagcttgcatatattatgcattgtcc 477  Q
    |||||||||||||| |||| |||||||||||||||||||||||    
T  17046397 ccgggattcgaact-cggatcttgcatatattatgcattgtcc 17046356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 435 - 477
Target Start/End: Complemental strand, 28207196 - 28207154
Alignment:
Q  435 ccgggattcgaacttcggagcttgcatatattatgcattgtcc 477  Q
    ||||||||||||| ||||| ||||||||| |||||||||||||    
T  28207196 ccgggattcgaacctcggaccttgcatattttatgcattgtcc 28207154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 478
Target Start/End: Original strand, 8544992 - 8545029
Alignment:
Q  441 ttcgaacttcggagcttgcatatattatgcattgtcct 478  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  8544992 ttcgaactccggaccttgcatatattatgcattgtcct 8545029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 478
Target Start/End: Original strand, 16531270 - 16531315
Alignment:
Q  433 gtccgggattcgaacttcggagcttgcatatattatgcattgtcct 478  Q
    |||||| |||||||||  ||| ||||||||||||||||||||||||    
T  16531270 gtccggaattcgaactatggaccttgcatatattatgcattgtcct 16531315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 473
Target Start/End: Complemental strand, 11017242 - 11017202
Alignment:
Q  433 gtccgggattcgaacttcggagcttgcatatattatgcatt 473  Q
    ||||||||||||||| || || |||||||||||||||||||    
T  11017242 gtccgggattcgaacctcagaccttgcatatattatgcatt 11017202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 475
Target Start/End: Complemental strand, 32339799 - 32339759
Alignment:
Q  435 ccgggattcgaacttcggagcttgcatatattatgcattgt 475  Q
    |||||||||||||  |||| |||||||||||||||||||||    
T  32339799 ccgggattcgaaccccggaccttgcatatattatgcattgt 32339759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 437 - 478
Target Start/End: Complemental strand, 25978379 - 25978338
Alignment:
Q  437 gggattcgaacttcggagcttgcatatattatgcattgtcct 478  Q
    ||||||||||| ||||| ||||||||||||||||||||||||    
T  25978379 gggattcgaacctcggaccttgcatatattatgcattgtcct 25978338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 478
Target Start/End: Complemental strand, 19908755 - 19908713
Alignment:
Q  436 cgggattcgaacttcggagcttgcatatattatgcattgtcct 478  Q
    |||| ||||||| ||||| ||||||||||||||||||||||||    
T  19908755 cggggttcgaacctcggaccttgcatatattatgcattgtcct 19908713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 478
Target Start/End: Complemental strand, 29910527 - 29910482
Alignment:
Q  433 gtccgggattcgaacttcggagcttgcatatattatgcattgtcct 478  Q
    |||||| ||| ||||||| || ||||||||||||||||||||||||    
T  29910527 gtccggaatttgaacttcagatcttgcatatattatgcattgtcct 29910482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 476
Target Start/End: Original strand, 42316821 - 42316862
Alignment:
Q  435 ccgggattcgaacttcggagcttgcatatattatgcattgtc 476  Q
    ||||||||||||| ||||| ||||||||||||||||| ||||    
T  42316821 ccgggattcgaacctcggaccttgcatatattatgcactgtc 42316862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 477
Target Start/End: Original strand, 2649736 - 2649772
Alignment:
Q  441 ttcgaacttcggagcttgcatatattatgcattgtcc 477  Q
    |||||||| |||| |||||||||||||||||||||||    
T  2649736 ttcgaactccggaccttgcatatattatgcattgtcc 2649772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 433 - 478
Target Start/End: Original strand, 38448861 - 38448906
Alignment:
Q  433 gtccgggattcgaacttcggagcttgcatatattatgcattgtcct 478  Q
    |||||||||||||||  |||| ||||||||||||||||||||||||    
T  38448861 gtccgggattcgaaccccggaccttgcatatattatgcattgtcct 38448906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 478
Target Start/End: Complemental strand, 1408501 - 1408456
Alignment:
Q  433 gtccgggattcgaacttcggagcttgcatatattatgcattgtcct 478  Q
    |||||| |||||||||||| |  |||||||||||||||||||||||    
T  1408501 gtccggaattcgaacttcgaactttgcatatattatgcattgtcct 1408456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 477
Target Start/End: Complemental strand, 4302515 - 4302474
Alignment:
Q  436 cgggattcgaacttcggagcttgcatatattatgcattgtcc 477  Q
    ||||||| ||||| |||| |||||||||||||||||||||||    
T  4302515 cgggatttgaactccggatcttgcatatattatgcattgtcc 4302474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 478
Target Start/End: Original strand, 6000138 - 6000183
Alignment:
Q  433 gtccgggattcgaacttcggagcttgcatatattatgcattgtcct 478  Q
    ||||||| || |||| ||||| ||||||||||||||||||||||||    
T  6000138 gtccggggtttgaacctcggaccttgcatatattatgcattgtcct 6000183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 478
Target Start/End: Original strand, 9639820 - 9639857
Alignment:
Q  441 ttcgaacttcggagcttgcatatattatgcattgtcct 478  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  9639820 ttcgaactccggaccttgcatatattatgcattgtcct 9639857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 478
Target Start/End: Original strand, 47528442 - 47528487
Alignment:
Q  433 gtccgggattcgaacttcggagcttgcatatattatgcattgtcct 478  Q
    ||||||| ||||||| ||||| ||||| ||||||||||||||||||    
T  47528442 gtccggggttcgaacctcggaccttgcgtatattatgcattgtcct 47528487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 478
Target Start/End: Complemental strand, 75389 - 75346
Alignment:
Q  435 ccgggattcgaacttcggagcttgcatatattatgcattgtcct 478  Q
    |||||||||||||  |||| ||||||||||||||||||||||||    
T  75389 ccgggattcgaaccccggaccttgcatatattatgcattgtcct 75346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 478
Target Start/End: Original strand, 8113559 - 8113602
Alignment:
Q  435 ccgggattcgaacttcggagcttgcatatattatgcattgtcct 478  Q
    |||||||||||||  |||| ||||||||||||||||||||||||    
T  8113559 ccgggattcgaaccgcggatcttgcatatattatgcattgtcct 8113602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 473
Target Start/End: Complemental strand, 14771397 - 14771357
Alignment:
Q  433 gtccgggattcgaacttcggagcttgcatatattatgcatt 473  Q
    ||||||||||||||| || || |||||||||||||||||||    
T  14771397 gtccgggattcgaacctcagaccttgcatatattatgcatt 14771357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 477
Target Start/End: Complemental strand, 19468517 - 19468473
Alignment:
Q  433 gtccgggattcgaacttcggagcttgcatatattatgcattgtcc 477  Q
    |||| ||||||||||  |||| |||||||||||||||||||||||    
T  19468517 gtcccggattcgaaccacggaccttgcatatattatgcattgtcc 19468473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 476
Target Start/End: Original strand, 46226023 - 46226063
Alignment:
Q  436 cgggattcgaacttcggagcttgcatatattatgcattgtc 476  Q
    |||| |||||||| |||| ||||||||||||||||||||||    
T  46226023 cggggttcgaactccggaccttgcatatattatgcattgtc 46226063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 473
Target Start/End: Complemental strand, 51614275 - 51614235
Alignment:
Q  433 gtccgggattcgaacttcggagcttgcatatattatgcatt 473  Q
    ||||||||||||||| ||||| |||||||||||| ||||||    
T  51614275 gtccgggattcgaacctcggaccttgcatatattttgcatt 51614235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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