View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1916_low_10 (Length: 413)

Name: NF1916_low_10
Description: NF1916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1916_low_10
NF1916_low_10
[»] chr8 (9 HSPs)
chr8 (17-403)||(14513119-14513512)
chr8 (341-390)||(14659659-14659708)
chr8 (342-390)||(29510257-29510304)
chr8 (254-313)||(24196632-24196691)
chr8 (290-352)||(13845235-13845297)
chr8 (281-362)||(8017478-8017559)
chr8 (281-390)||(36450718-36450821)
chr8 (354-390)||(38487181-38487217)
chr8 (348-392)||(44067580-44067624)
[»] chr4 (17 HSPs)
chr4 (249-388)||(24343467-24343606)
chr4 (340-390)||(10133754-10133804)
chr4 (296-390)||(3144611-3144704)
chr4 (348-408)||(17876219-17876279)
chr4 (296-390)||(31243500-31243600)
chr4 (281-390)||(20743230-20743345)
chr4 (319-390)||(53381554-53381625)
chr4 (354-390)||(11931350-11931386)
chr4 (327-390)||(944626-944689)
chr4 (278-390)||(7012055-7012173)
chr4 (348-390)||(18513199-18513241)
chr4 (296-390)||(19230265-19230361)
chr4 (342-395)||(20521804-20521857)
chr4 (282-391)||(53968539-53968648)
chr4 (342-390)||(22234843-22234890)
chr4 (342-390)||(30982831-30982878)
chr4 (281-325)||(32273549-32273593)
[»] chr3 (15 HSPs)
chr3 (287-380)||(25326424-25326517)
chr3 (281-390)||(25074781-25074890)
chr3 (296-383)||(12704622-12704709)
chr3 (278-374)||(14223827-14223923)
chr3 (282-390)||(25651989-25652097)
chr3 (296-390)||(21211295-21211389)
chr3 (296-388)||(52369782-52369880)
chr3 (292-366)||(25892463-25892537)
chr3 (280-348)||(15864824-15864892)
chr3 (348-392)||(24205003-24205047)
chr3 (348-395)||(26665189-26665236)
chr3 (288-375)||(27903631-27903718)
chr3 (299-389)||(51512142-51512232)
chr3 (281-390)||(10954944-10955047)
chr3 (280-325)||(28812506-28812551)
[»] chr7 (10 HSPs)
chr7 (290-390)||(7133236-7133336)
chr7 (296-390)||(5938479-5938573)
chr7 (300-388)||(23930230-23930318)
chr7 (253-375)||(4017767-4017889)
chr7 (296-392)||(25239654-25239755)
chr7 (281-392)||(43249985-43250101)
chr7 (342-390)||(598256-598303)
chr7 (331-383)||(9199402-9199454)
chr7 (296-352)||(29812660-29812716)
chr7 (290-334)||(46644701-46644745)
[»] chr5 (9 HSPs)
chr5 (296-375)||(43554528-43554607)
chr5 (281-397)||(7997123-7997233)
chr5 (278-371)||(14574027-14574119)
chr5 (318-390)||(21137718-21137788)
chr5 (342-390)||(2419914-2419962)
chr5 (281-331)||(24906318-24906368)
chr5 (296-376)||(25863211-25863291)
chr5 (298-358)||(39695989-39696049)
chr5 (342-390)||(42893408-42893455)
[»] chr6 (11 HSPs)
chr6 (296-395)||(34446572-34446671)
chr6 (281-390)||(17168421-17168530)
chr6 (251-351)||(6389705-6389805)
chr6 (272-331)||(10770691-10770750)
chr6 (281-352)||(19602177-19602248)
chr6 (342-397)||(33419221-33419276)
chr6 (282-331)||(7801173-7801222)
chr6 (238-331)||(16766646-16766739)
chr6 (251-331)||(7938078-7938158)
chr6 (251-331)||(7977847-7977927)
chr6 (342-382)||(33405360-33405400)
[»] chr1 (7 HSPs)
chr1 (296-375)||(42004920-42004999)
chr1 (317-391)||(20157307-20157381)
chr1 (296-378)||(6936370-6936452)
chr1 (155-196)||(38474599-38474640)
chr1 (128-196)||(5086046-5086114)
chr1 (342-390)||(32899938-32899986)
chr1 (342-390)||(40258897-40258944)
[»] chr2 (8 HSPs)
chr2 (281-375)||(37986771-37986865)
chr2 (342-392)||(12601163-12601213)
chr2 (296-390)||(24011043-24011137)
chr2 (296-354)||(25544488-25544546)
chr2 (299-376)||(11307970-11308053)
chr2 (348-408)||(18889525-18889585)
chr2 (272-390)||(18840977-18841089)
chr2 (290-352)||(23354648-23354710)
[»] scaffold0652 (1 HSPs)
scaffold0652 (342-390)||(426-473)
[»] scaffold0007 (1 HSPs)
scaffold0007 (348-392)||(225219-225263)


Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 403
Target Start/End: Complemental strand, 14513512 - 14513119
Alignment:
Q  17 atagacaatttgcatttaaatactacagtctagtttataaagtaacaataagtcattaaaaaagtgggtaaataggtattttagttcttaaattgtattg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  14513512 atagacaatttgcatttaaatactacagtctagtttataaagtaacaataagtcattaaaaaagtgggtaaataggtattttagttcttaaattgtactg 14513413  T
Q  117 taaaaatcatcaatttaatcccttaaatttttgaaataacaaattagtccattaagttaaagaatatcaacaaatttagtctcaaccat-------nnnn 209  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||               
T  14513412 taaaaatcataaatttaatcccttaaatttttgaaataacaaattagtccattaagttaaagaatatcaataaatttagtctcaaccataaaaaaaaaaa 14513313  T
Q  210 nnnnngttttgtaaacattcaatttataaagcatggaatcagacacagacaccgaacacaatatggagaccgacacgccaacacaaataataatttgaag 309  Q
            ||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||      
T  14513312 aaaaaaaattgtaaacattcaatttatgaagcatggaatcagacacggacaccgaacacgatatggagaccgacacgccaacaaaaataataatttgaga 14513213  T
Q  310 aaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtct 403  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| | ||||||||||| ||||||||||||    
T  14513212 aaattacataattcagcgtaatcatagatttggtgtcggtgtcagacaccgacgcatgtccgacaccggaacacacctaatccaagaattgtct 14513119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 390
Target Start/End: Complemental strand, 14659708 - 14659659
Alignment:
Q  341 ggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 390  Q
    ||||||||||||||||||| |||||||||| |||||  ||||||||||||    
T  14659708 ggtgtcggtgtcagacaccaacgcgtgtccaacaccgagacacacctaat 14659659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 29510304 - 29510257
Alignment:
Q  342 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 390  Q
    ||||||||||| ||||| ||||||||||||||||| |||||||||||||    
T  29510304 gtgtcggtgtcggacac-gacgcgtgtccgacaccgggacacacctaat 29510257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 24196691 - 24196632
Alignment:
Q  254 acagacaccgaacacaatatggagaccgacacgccaacacaaataataatttgaagaaat 313  Q
    |||||||||||| || ||| ||| ||||||||||| |||||| |||||||||||| ||||    
T  24196691 acagacaccgaatacgatacggacaccgacacgccgacacaactaataatttgaaaaaat 24196632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 352
Target Start/End: Original strand, 13845235 - 13845297
Alignment:
Q  290 acacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtc 352  Q
    ||||||||||||||||||  |||| |||||||| || |||||||||| ||| ||||| |||||    
T  13845235 acacaaataataatttgagaaaatgatataatttagagtaatcataggtgtcgtgtctgtgtc 13845297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 362
Target Start/End: Original strand, 8017478 - 8017559
Alignment:
Q  281 gacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgac 362  Q
    |||| ||||||| | |||||||| |||| |||| | |||||| || |||||||||||||| ||||| ||||  |||||||||    
T  8017478 gacatgccaacatagataataatatgaaaaaatgacataattgagtgtaatcatagatgtcgtgtcagtgttggacaccgac 8017559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 390
Target Start/End: Complemental strand, 36450821 - 36450718
Alignment:
Q  281 gacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccagga 380  Q
    |||||||| |||||| |||||||||||| |||| | | ||||||| ||||| | |      |||| |||||| ||||| |||||||||||||||||||||    
T  36450821 gacacgccgacacaactaataatttgaaaaaatcacagaattcagtgtaattacaa-----gtgtaggtgtcggacac-gacgcgtgtccgacaccagga 36450728  T
Q  381 cacacctaat 390  Q
    ||| ||||||    
T  36450727 cacgcctaat 36450718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 390
Target Start/End: Complemental strand, 38487217 - 38487181
Alignment:
Q  354 gacaccgacgcgtgtccgacaccaggacacacctaat 390  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  38487217 gacaccgacgcgtgtccgacacccggacacacataat 38487181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 392
Target Start/End: Original strand, 44067580 - 44067624
Alignment:
Q  348 gtgtcagacaccgacgcgtgtccgacaccaggacacacctaattc 392  Q
    ||||| ||||| || ||||||||||||||||||||| ||||||||    
T  44067580 gtgtcggacactgatgcgtgtccgacaccaggacacgcctaattc 44067624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 249 - 388
Target Start/End: Original strand, 24343467 - 24343606
Alignment:
Q  249 cagacacagacaccgaacacaatatggagaccgacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcgg 348  Q
    ||||||| ||||||| |||| | | |||  |||||||||| ||||  ||||||||||||  |||||| ||||||||| ||||| |||| ||| |||||||    
T  24343467 cagacacggacaccggacacgacacggacgccgacacgccgacacggataataatttgagaaaattacataattcagtgtaattataggtgtcgtgtcgg 24343566  T
Q  349 tgtcagacaccgacgcgtgtccgacaccaggacacaccta 388  Q
    |||| ||||||||||||||||||||||| |||||| ||||    
T  24343567 tgtccgacaccgacgcgtgtccgacaccgggacacgccta 24343606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 340 - 390
Target Start/End: Original strand, 10133754 - 10133804
Alignment:
Q  340 tggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 390  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10133754 tggtgtcggtgtcagacactgacgcgtgtccgacaccaggacacacctaat 10133804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 390
Target Start/End: Complemental strand, 3144704 - 3144611
Alignment:
Q  296 ataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 390  Q
    |||||||||| |  |||| |||||||| || |||||||||| ||| |||||||||||||||||| |||||||||| |||| | ||||||||||||    
T  3144704 ataataatttcagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcagacaccaacgcgtgtccaacacga-gacacacctaat 3144611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 348 - 408
Target Start/End: Original strand, 17876219 - 17876279
Alignment:
Q  348 gtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctctgct 408  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||| | ||||| ||||    
T  17876219 gtgtcagacaccgacgcttgtccgacaccaggacacacctaatccaaggagtgtctgtgct 17876279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 390
Target Start/End: Complemental strand, 31243600 - 31243500
Alignment:
Q  296 ataataatttgaagaaattatataattcagcgtaatcatagatgt------ggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaa 389  Q
    ||||||||||||  |||| | ||||||||| |||||||||| |||      ||||| |||||| |||||||| |||||| ||||||||||||||||||||    
T  31243600 ataataatttgagaaaatgacataattcagtgtaatcataggtgtcatgtcggtgttggtgtcggacaccgatgcgtgttcgacaccaggacacacctaa 31243501  T
Q  390 t 390  Q
    |    
T  31243500 t 31243500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 390
Target Start/End: Complemental strand, 20743345 - 20743230
Alignment:
Q  281 gacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcgg------tgtcagacaccgacgcgtgtccgaca 374  Q
    |||||||| ||||  ||||||||||||  |||| | ||||||||| |||||||||| ||| |||||||      |||||||||||||| |||||||||||    
T  20743345 gacacgccgacacggataataatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcggtgtcgatgtcagacaccgacacgtgtccgaca 20743246  T
Q  375 ccaggacacacctaat 390  Q
    || | ||||| |||||    
T  20743245 ccggaacacatctaat 20743230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 390
Target Start/End: Complemental strand, 53381625 - 53381554
Alignment:
Q  319 aattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 390  Q
    ||||||| ||||| ||||  || ||||||||||| ||||| ||||||| ||||||||| |||||||||||||    
T  53381625 aattcagtgtaattataggcgtcgtgtcggtgtcggacactgacgcgtatccgacaccgggacacacctaat 53381554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 390
Target Start/End: Original strand, 11931350 - 11931386
Alignment:
Q  354 gacaccgacgcgtgtccgacaccaggacacacctaat 390  Q
    ||||||||||| |||||||||||||||||||||||||    
T  11931350 gacaccgacgcatgtccgacaccaggacacacctaat 11931386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 390
Target Start/End: Complemental strand, 944689 - 944626
Alignment:
Q  327 gtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 390  Q
    ||||| |||| ||| ||||| |||||  |||| ||||||||||||||||| |||||||||||||    
T  944689 gtaattataggtgtcgtgtcagtgtcgaacacagacgcgtgtccgacaccgggacacacctaat 944626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 390
Target Start/End: Original strand, 7012055 - 7012173
Alignment:
Q  278 accgacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagat------gtggtgtcggtgtcagacaccgacgcgtgtccg 371  Q
    ||||||||||| ||||  ||||||||||||  |||| | ||||||||| || ||||||| |      || ||||||||||| ||||||||||||| ||||    
T  7012055 accgacacgccgacaccgataataatttgagaaaatgacataattcagtgtgatcataggtatcggtgttgtgtcggtgtcggacaccgacgcgtatccg 7012154  T
Q  372 acaccaggacacacctaat 390  Q
    ||||| ||  |||||||||    
T  7012155 acaccggggaacacctaat 7012173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 390
Target Start/End: Complemental strand, 18513241 - 18513199
Alignment:
Q  348 gtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 390  Q
    ||||| |||||||||| ||||||||||||||||||| ||||||    
T  18513241 gtgtcggacaccgacgtgtgtccgacaccaggacacgcctaat 18513199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 390
Target Start/End: Complemental strand, 19230361 - 19230265
Alignment:
Q  296 ataataatttgaagaaattatataattcagcgtaatcatagatgtggtgt--cggtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 390  Q
    ||||||||||||  |||| | ||||||||  ||||| |||| ||| ||||  ||||||||||||| || |||||| ||||| ||||||||| |||||    
T  19230361 ataataatttgagaaaataacataattcaatgtaattataggtgtcgtgtgtcggtgtcagacacggatgcgtgttcgacaacaggacacatctaat 19230265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 395
Target Start/End: Complemental strand, 20521857 - 20521804
Alignment:
Q  342 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaag 395  Q
    ||||||||||| ||||||||||| ||||||| |||| ||||| |||||| ||||    
T  20521857 gtgtcggtgtcggacaccgacgcatgtccgaaaccatgacacgcctaatccaag 20521804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 391
Target Start/End: Original strand, 53968539 - 53968648
Alignment:
Q  282 acacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggac 381  Q
    ||||||| | || ||||||||||| |  |||| | ||||||||| |  ||||||||||| |||||||| || || ||| ||| |||||| | ||||||||    
T  53968539 acacgccgataccaataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcggtttccgaaaccaacgtgtgtccaaaaccaggac 53968638  T
Q  382 acacctaatt 391  Q
    |||| |||||    
T  53968639 acacttaatt 53968648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 22234890 - 22234843
Alignment:
Q  342 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 390  Q
    ||||||||||| ||||| ||| ||||||||||||||||||||| |||||    
T  22234890 gtgtcggtgtctgacac-gacacgtgtccgacaccaggacacagctaat 22234843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 30982878 - 30982831
Alignment:
Q  342 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 390  Q
    ||||||||||||||||| ||| ||||||||||||| |||||| ||||||    
T  30982878 gtgtcggtgtcagacac-gacacgtgtccgacaccgggacacgcctaat 30982831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 325
Target Start/End: Complemental strand, 32273593 - 32273549
Alignment:
Q  281 gacacgccaacacaaataataatttgaagaaattatataattcag 325  Q
    ||||||||||||||| |||||||||||| |||| | |||||||||    
T  32273593 gacacgccaacacaactaataatttgaaaaaataacataattcag 32273549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 287 - 380
Target Start/End: Original strand, 25326424 - 25326517
Alignment:
Q  287 ccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccagga 380  Q
    |||||||| |||||||||| || |||| |||||||| || ||||| |||||||| |||| |||||| ||||||||||||||| |||||||||||    
T  25326424 ccaacacagataataatttaaaaaaataatataatttagtgtaattatagatgtcgtgttggtgtcggacaccgacgcgtgttcgacaccagga 25326517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 281 - 390
Target Start/End: Original strand, 25074781 - 25074890
Alignment:
Q  281 gacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccagga 380  Q
    |||||||| ||||  ||||||||||||  |||| | |||||| || ||||||||||  || ||||||||||| |||||| |||||||||||||||  |||    
T  25074781 gacacgccgacaccgataataatttgagaaaatgacataattgagtgtaatcataggcgttgtgtcggtgtctgacaccaacgcgtgtccgacactggga 25074880  T
Q  381 cacacctaat 390  Q
    ||||||||||    
T  25074881 cacacctaat 25074890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 296 - 383
Target Start/End: Complemental strand, 12704709 - 12704622
Alignment:
Q  296 ataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacac 383  Q
    ||||||||||||| |||| | ||||||||  |||||||||| ||| ||||||||||| |||||| |||| ||||||||||||| ||||    
T  12704709 ataataatttgaaaaaatgacataattcaatgtaatcataggtgtcgtgtcggtgtcggacaccaacgcatgtccgacaccagaacac 12704622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 278 - 374
Target Start/End: Complemental strand, 14223923 - 14223827
Alignment:
Q  278 accgacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgaca 374  Q
    ||||||||||| ||||| ||||||||||||  |||  |||||||| || ||| |||||  ||| ||||||||||| ||||||||| |||||||||||    
T  14223923 accgacacgccgacacagataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacaccgacacgtgtccgaca 14223827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 390
Target Start/End: Complemental strand, 25652097 - 25651989
Alignment:
Q  282 acacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggac 381  Q
    ||||||||||||  ||||||||||||  |||| ||||||||||| ||| | |||| ||| ||||| ||||  ||||||||| ||||| |||||||  |||    
T  25652097 acacgccaacacggataataatttgagaaaatgatataattcagtgtagttataggtgttgtgtcagtgttggacaccgacacgtgttcgacaccgagac 25651998  T
Q  382 acacctaat 390  Q
    |||||||||    
T  25651997 acacctaat 25651989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 390
Target Start/End: Original strand, 21211295 - 21211389
Alignment:
Q  296 ataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 390  Q
    ||||||||||||  |||||| ||| ||||| ||||| || | ||| ||||||||||  ||||||||||||||||||||||  |||||| ||||||    
T  21211295 ataataatttgagaaaattacatagttcagtgtaattatgggtgtcgtgtcggtgttcgacaccgacgcgtgtccgacactgggacactcctaat 21211389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 388
Target Start/End: Original strand, 52369782 - 52369880
Alignment:
Q  296 ataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcag------acaccgacgcgtgtccgacaccaggacacaccta 388  Q
    ||||||||||||  |||||| ||||||||  |||||||||| ||| ||||||||||| |      |||||||||||||||| ||||| |||||||||||    
T  52369782 ataataatttgagaaaattacataattcaatgtaatcataggtgtcgtgtcggtgtcggtatcggacaccgacgcgtgtccaacaccgggacacaccta 52369880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 366
Target Start/End: Original strand, 25892463 - 25892537
Alignment:
Q  292 acaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgt 366  Q
    |||||||||||||| |  |||| ||||||||||| |||||||||| ||| ||||| ||||| |||||| ||||||    
T  25892463 acaaataataatttaagaaaatgatataattcagtgtaatcataggtgtcgtgtcagtgtcggacaccaacgcgt 25892537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 348
Target Start/End: Original strand, 15864824 - 15864892
Alignment:
Q  280 cgacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcgg 348  Q
    ||||||||| ||||  ||||||||||||| |||| |||||||| || |||||||||| ||| |||||||    
T  15864824 cgacacgccgacacggataataatttgaaaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 15864892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 392
Target Start/End: Complemental strand, 24205047 - 24205003
Alignment:
Q  348 gtgtcagacaccgacgcgtgtccgacaccaggacacacctaattc 392  Q
    ||||| ||||| |||||||||||||||||||||||| ||||||||    
T  24205047 gtgtcggacactgacgcgtgtccgacaccaggacacgcctaattc 24205003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 348 - 395
Target Start/End: Original strand, 26665189 - 26665236
Alignment:
Q  348 gtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaag 395  Q
    ||||| |||||||| |||||||||||||||| |||| |||||||||||    
T  26665189 gtgtcggacaccgaagcgtgtccgacaccagaacacccctaattcaag 26665236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 375
Target Start/End: Original strand, 27903631 - 27903718
Alignment:
Q  288 caacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacac 375  Q
    ||||||| ||||||||||||  |||  |||||||| |  |||||||||  ||| ||||||||||| || ||||||||||||| |||||    
T  27903631 caacacagataataatttgagaaaacgatataatttaatgtaatcataagtgttgtgtcggtgtcggataccgacgcgtgtctgacac 27903718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 389
Target Start/End: Complemental strand, 51512232 - 51512142
Alignment:
Q  299 ataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaa 389  Q
    |||||||||  |||| | ||||||||  | |||||||  ||| |||||||||||  ||||||| ||||||| ||||||||||||| |||||    
T  51512232 ataatttgataaaatcacataattcaatggaatcatatgtgtcgtgtcggtgtcgaacaccgatgcgtgtctgacaccaggacacgcctaa 51512142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 390
Target Start/End: Original strand, 10954944 - 10955047
Alignment:
Q  281 gacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccagga 380  Q
    |||||||| |||||| |||||||||||| |||| | ||||||||| ||||||| |      ||||||||||| |||| |||| ||||||||||||  |||    
T  10954944 gacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaatcaca-----agtgtcggtgtcggaca-cgacacgtgtccgacactggga 10955037  T
Q  381 cacacctaat 390  Q
    ||| ||||||    
T  10955038 cacgcctaat 10955047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 28812506 - 28812551
Alignment:
Q  280 cgacacgccaacacaaataataatttgaagaaattatataattcag 325  Q
    ||||||||| |||||| ||||||||||||||||| | |||||||||    
T  28812506 cgacacgccgacacaactaataatttgaagaaatcacataattcag 28812551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 290 - 390
Target Start/End: Complemental strand, 7133336 - 7133236
Alignment:
Q  290 acacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaa 389  Q
    ||||| || |||||||||  |||| | ||||||||| |||||||||| ||  ||||||||||| ||||||||||||||||||||||  ||||||||||||    
T  7133336 acacagatgataatttgagaaaatgacataattcagtgtaatcataggtggtgtgtcggtgtcggacaccgacgcgtgtccgacactgggacacacctaa 7133237  T
Q  390 t 390  Q
    |    
T  7133236 t 7133236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 390
Target Start/End: Original strand, 5938479 - 5938573
Alignment:
Q  296 ataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 390  Q
    ||||||||||||  |||| | |||||||||  |||| |||| ||| |||||||||||||||||||| |||||||||||||| | |||||||||||    
T  5938479 ataataatttgataaaataacataattcagtataattataggtgttgtgtcggtgtcagacaccgatgcgtgtccgacaccggaacacacctaat 5938573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 388
Target Start/End: Original strand, 23930230 - 23930318
Alignment:
Q  300 taatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacaccta 388  Q
    ||||||||  |||| | ||||||||| |||||||||| ||| ||||||||||| || ||||| |||||||||||||| ||| |||||||    
T  23930230 taatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcggtgtcggataccgatgcgtgtccgacaccgggatacaccta 23930318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 375
Target Start/End: Complemental strand, 4017889 - 4017767
Alignment:
Q  253 cacagacaccgaacacaatatggagaccgacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtc 352  Q
    ||||||||| | |||| | | ||| ||||||||||| ||||  ||||||||||||  |||  |||||||| || |||||||||  ||| |||| ||||||    
T  4017889 cacagacactggacacgacacggacaccgacacgccgacacggataataatttgagaaaacgatataatttagtgtaatcataagtgtcgtgttggtgtc 4017790  T
Q  353 agacaccgacgcgtgtccgacac 375  Q
     |||||||||| ||||| |||||    
T  4017789 ggacaccgacgtgtgtctgacac 4017767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 392
Target Start/End: Complemental strand, 25239755 - 25239654
Alignment:
Q  296 ataataatttgaagaaattatataattcagcgtaatcatag-----atgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 390  Q
    ||||||||||||  ||||| ||||| |||| ||||| ||||     |||| ||||||||||| ||||  |||| ||||||||||||||||||| ||||||    
T  25239755 ataataatttgagaaaattttataactcagtgtaattataggtgtcatgttgtgtcggtgtcggacattgacgtgtgtccgacaccaggacacccctaat 25239656  T
Q  391 tc 392  Q
    ||    
T  25239655 tc 25239654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 392
Target Start/End: Original strand, 43249985 - 43250101
Alignment:
Q  281 gacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtca-----gacaccgacgcgtgtccgacac 375  Q
    |||||||| ||||  ||||||||||||  |||| | ||||| ||| ||||| |||  ||| |||||||||||      ||||| ||||||||||||||||    
T  43249985 gacacgccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcggtgtcgcgtcggacactgacgcgtgtccgacac 43250084  T
Q  376 caggacacacctaattc 392  Q
    |||||||| ||||||||    
T  43250085 caggacacgcctaattc 43250101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 598256 - 598303
Alignment:
Q  342 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 390  Q
    ||||||||||||||||| ||| ||||||||||||| |||||| ||||||    
T  598256 gtgtcggtgtcagacac-gacacgtgtccgacaccgggacacgcctaat 598303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 383
Target Start/End: Complemental strand, 9199454 - 9199402
Alignment:
Q  331 tcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacac 383  Q
    |||||||||| ||||||||||| |||| |||  ||||| ||||||||||||||    
T  9199454 tcatagatgttgtgtcggtgtcggacatcgatacgtgttcgacaccaggacac 9199402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 352
Target Start/End: Complemental strand, 29812716 - 29812660
Alignment:
Q  296 ataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtc 352  Q
    ||||||||||||  |||| |||||||| || |||||||||| ||| |||||||||||    
T  29812716 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtc 29812660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 334
Target Start/End: Complemental strand, 46644745 - 46644701
Alignment:
Q  290 acacaaataataatttgaagaaattatataattcagcgtaatcat 334  Q
    |||| |||||||||||||| ||||||||||||| || ||||||||    
T  46644745 acaccaataataatttgaaaaaattatataatttagtgtaatcat 46644701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 296 - 375
Target Start/End: Original strand, 43554528 - 43554607
Alignment:
Q  296 ataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacac 375  Q
    ||||||||||||  |||| |||||||| || |||||||||| ||| ||||||||||| ||||||||||||||||||||||    
T  43554528 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcggacaccgacgcgtgtccgacac 43554607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 281 - 397
Target Start/End: Complemental strand, 7997233 - 7997123
Alignment:
Q  281 gacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccagga 380  Q
    |||||||||||||  ||||||||||||  |||| ||||||| ||| ||||| |||  ||| |||||||      |||| ||||||||||||||| |||||    
T  7997233 gacacgccaacacggataataatttgagaaaatgatataatacagtgtaattataagtgtcgtgtcgg------acactgacgcgtgtccgacatcagga 7997140  T
Q  381 cacacctaattcaagaa 397  Q
    |||||||||||| ||||    
T  7997139 cacacctaattcgagaa 7997123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 371
Target Start/End: Complemental strand, 14574119 - 14574027
Alignment:
Q  278 accgacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccg 371  Q
    ||||||||||| |||| | ||||||||||| ||||| ||||||||||| ||||| |||| | | ||||| ||||| ||| ||||||||||||||    
T  14574119 accgacacgccgacacgagtaataatttgatgaaatgatataattcagtgtaattataggt-tcgtgtcagtgtcggacgccgacgcgtgtccg 14574027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 390
Target Start/End: Original strand, 21137718 - 21137788
Alignment:
Q  318 taattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 390  Q
    |||||||| | |||||||| ||| ||||||||  | |||||| |||||||||||||||| |||||||||||||    
T  21137718 taattcagtgaaatcataggtgtcgtgtcggt--cggacaccaacgcgtgtccgacaccgggacacacctaat 21137788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 2419914 - 2419962
Alignment:
Q  342 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 390  Q
    |||| ||||||||||||||| ||||||||||| || |||||||||||||    
T  2419914 gtgttggtgtcagacaccgatgcgtgtccgaccccgggacacacctaat 2419962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 331
Target Start/End: Complemental strand, 24906368 - 24906318
Alignment:
Q  281 gacacgccaacacaaataataatttgaagaaattatataattcagcgtaat 331  Q
    |||||||||||||| ||||||||||||| |||| | ||||||||| |||||    
T  24906368 gacacgccaacacagataataatttgaaaaaatgacataattcagtgtaat 24906318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 376
Target Start/End: Original strand, 25863211 - 25863291
Alignment:
Q  296 ataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacacc 376  Q
    ||||||||||||  |||| ||||||||||| ||||| |||  ||| ||||| ||||| | |||||| ||||||| ||||||    
T  25863211 ataataatttgagaaaatgatataattcagtgtaattataagtgtcgtgtcagtgtcgggcaccgatgcgtgtctgacacc 25863291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 39696049 - 39695989
Alignment:
Q  298 aataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacac 358  Q
    ||||||||||  |||| |||||||| || |||||||||| ||| ||||||||||| |||||    
T  39696049 aataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtccgacac 39695989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 42893408 - 42893455
Alignment:
Q  342 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 390  Q
    |||||||||||||||||  || |||||||||||||||||||| ||||||    
T  42893408 gtgtcggtgtcagacaca-acacgtgtccgacaccaggacacgcctaat 42893455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 296 - 395
Target Start/End: Original strand, 34446572 - 34446671
Alignment:
Q  296 ataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaag 395  Q
    ||||||||||||  |||| | ||||||||| |||||||||| ||| |||||||||||  |||||||||||| || |||||  ||||||||||||| ||||    
T  34446572 ataataatttgagaaaatgacataattcagtgtaatcataggtgtcgtgtcggtgtccaacaccgacgcgtatctgacactgggacacacctaatccaag 34446671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 390
Target Start/End: Complemental strand, 17168530 - 17168421
Alignment:
Q  281 gacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccagga 380  Q
    |||||||||||||  ||||||||||||  |||| |||||||| || ||||| |||| ||| ||||||||||| ||||| ||| ||||||  |||| ||||    
T  17168530 gacacgccaacactgataataatttgagaaaatgatataatttagtgtaataataggtgtcgtgtcggtgtcggacactgacacgtgtctaacactagga 17168431  T
Q  381 cacacctaat 390  Q
    ||| ||||||    
T  17168430 cacccctaat 17168421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 351
Target Start/End: Original strand, 6389705 - 6389805
Alignment:
Q  251 gacacagacaccgaacacaatatggagaccgacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtg 350  Q
    ||||||||||||| |||| | | ||| ||  ||||||| ||||  ||||||||||||  |||| |||||||| || |||||||||| ||| |||||||||    
T  6389705 gacacagacaccggacacgacacggacactcacacgccgacacggataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtg 6389804  T
Q  351 t 351  Q
    |    
T  6389805 t 6389805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 272 - 331
Target Start/End: Complemental strand, 10770750 - 10770691
Alignment:
Q  272 atggagaccgacacgccaacacaaataataatttgaagaaattatataattcagcgtaat 331  Q
    ||||| || ||||||||||||||| |||||||||||| |||| | ||||||||| |||||    
T  10770750 atggacactgacacgccaacacaactaataatttgaaaaaatcacataattcagtgtaat 10770691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 19602248 - 19602177
Alignment:
Q  281 gacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtc 352  Q
    ||||| |||||||  ||||||||||||  |||| ||||||||||| |||||||||| | | |||||||||||    
T  19602248 gacacaccaacactgataataatttgagaaaatgatataattcagtgtaatcataggtattgtgtcggtgtc 19602177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 397
Target Start/End: Original strand, 33419221 - 33419276
Alignment:
Q  342 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaa 397  Q
    |||| ||||||||||||| |||||||||| |||||||||||  |||||| ||||||    
T  33419221 gtgttggtgtcagacaccaacgcgtgtccaacaccaggacatgcctaatccaagaa 33419276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 331
Target Start/End: Complemental strand, 7801222 - 7801173
Alignment:
Q  282 acacgccaacacaaataataatttgaagaaattatataattcagcgtaat 331  Q
    ||||||| |||||| |||||||||||| |||| | |||||||||||||||    
T  7801222 acacgccgacacaactaataatttgaaaaaatcacataattcagcgtaat 7801173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 331
Target Start/End: Original strand, 16766646 - 16766739
Alignment:
Q  238 aagcatggaatcagacacagacaccgaacacaatatggagaccgacacgccaacacaaataataatttgaagaaattatataattcagcgtaat 331  Q
    |||||||||  | ||||| ||||||| |||| | ||||| || |||||||| |||||  |||||||||||| |||| | ||||||||| |||||    
T  16766646 aagcatggatacggacacggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaat 16766739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 331
Target Start/End: Original strand, 7938078 - 7938158
Alignment:
Q  251 gacacagacaccgaacacaatatggagaccgacacgccaacacaaataataatttgaagaaattatataattcagcgtaat 331  Q
    ||||| ||||||| |||| | ||||| || |||||||| |||||  |||||||||||| |||| |||||||| || |||||    
T  7938078 gacacggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaat 7938158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 331
Target Start/End: Complemental strand, 7977927 - 7977847
Alignment:
Q  251 gacacagacaccgaacacaatatggagaccgacacgccaacacaaataataatttgaagaaattatataattcagcgtaat 331  Q
    ||||| ||||| | |||| | ||||| || |||||||| |||||  |||||||||||| |||||| ||||||||| |||||    
T  7977927 gacacggacactggacacgacatggatactgacacgccgacacagctaataatttgaaaaaattacataattcagtgtaat 7977847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 382
Target Start/End: Original strand, 33405360 - 33405400
Alignment:
Q  342 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggaca 382  Q
    |||| |||| ||||||||||||||||||| |||||||||||    
T  33405360 gtgttggtgccagacaccgacgcgtgtccaacaccaggaca 33405400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 375
Target Start/End: Complemental strand, 42004999 - 42004920
Alignment:
Q  296 ataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacac 375  Q
    ||||||||||||  |||| | |||||| || |||||||||| ||| ||||||||||| ||||||||||| ||||||||||    
T  42004999 ataataatttgagaaaatgacataatttagtgtaatcataggtgttgtgtcggtgtcggacaccgacgcatgtccgacac 42004920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 317 - 391
Target Start/End: Complemental strand, 20157381 - 20157307
Alignment:
Q  317 ataattcagcgtaatcatagatgt-ggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaatt 391  Q
    ||||||||| |||||||||  ||| ||||||| |||| |||||||||||||||||||||||  |||||||||||||    
T  20157381 ataattcagtgtaatcatatgtgtcggtgtcg-tgtccgacaccgacgcgtgtccgacaccgagacacacctaatt 20157307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 378
Target Start/End: Complemental strand, 6936452 - 6936370
Alignment:
Q  296 ataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccag 378  Q
    |||||||| |||  |||| | |||||| || |||||||||| ||| ||||| ||||| ||||||||||| | |||||||||||    
T  6936452 ataataatctgagaaaatgacataattaagtgtaatcataggtgtcgtgtctgtgtcggacaccgacgcatatccgacaccag 6936370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 38474599 - 38474640
Alignment:
Q  155 acaaattagtccattaagttaaagaatatcaacaaatttagt 196  Q
    ||||||||| ||||||||||||||||||||||  ||||||||    
T  38474599 acaaattagcccattaagttaaagaatatcaatcaatttagt 38474640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 5086114 - 5086046
Alignment:
Q  128 aatttaatcccttaaatttttgaaataacaaattagtccattaagttaaagaatatcaacaaatttagt 196  Q
    |||||| ||||| ||||||   ||||| ||||||||||| |||| ||||||||||||||  ||||||||    
T  5086114 aatttagtccctcaaatttacaaaatagcaaattagtcctttaaattaaagaatatcaatcaatttagt 5086046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 32899938 - 32899986
Alignment:
Q  342 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 390  Q
    ||||||||||| ||||||||||| |||| |||||| |||||| ||||||    
T  32899938 gtgtcggtgtcggacaccgacgcatgtcggacaccgggacacccctaat 32899986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 40258944 - 40258897
Alignment:
Q  342 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 390  Q
    ||||||||||||||||| ||| | |||||||||||||||||| ||||||    
T  40258944 gtgtcggtgtcagacac-gacacctgtccgacaccaggacacgcctaat 40258897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 281 - 375
Target Start/End: Original strand, 37986771 - 37986865
Alignment:
Q  281 gacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacac 375  Q
    |||||||| ||||| ||||||||||||| |||| ||||| || || |||||||||| | | |||| |||||| |||||||||| ||||| |||||    
T  37986771 gacacgccgacacagataataatttgaaaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgtctgacac 37986865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 342 - 392
Target Start/End: Complemental strand, 12601213 - 12601163
Alignment:
Q  342 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattc 392  Q
    ||||| |||||| |||||||||||||||| |||||| ||||||||||||||    
T  12601213 gtgtcagtgtcaaacaccgacgcgtgtccaacaccaagacacacctaattc 12601163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 390
Target Start/End: Original strand, 24011043 - 24011137
Alignment:
Q  296 ataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 390  Q
    ||||||||||||  |||| | |||||| || |||||||||| ||| | ||||||||| || || || ||||||||||||||| ||||||| ||||    
T  24011043 ataataatttgagaaaatgacataatttagtgtaatcataggtgtcgcgtcggtgtctgatacggatgcgtgtccgacaccaagacacacataat 24011137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 25544488 - 25544546
Alignment:
Q  296 ataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcag 354  Q
    ||||||||||||  |||| ||||||||||| |||||||||| ||| |||||||||||||    
T  25544488 ataataatttgagaaaatgatataattcagtgtaatcataggtgtcgtgtcggtgtcag 25544546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 376
Target Start/End: Complemental strand, 11308053 - 11307970
Alignment:
Q  299 ataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtc------agacaccgacgcgtgtccgacacc 376  Q
    |||||||||| |||| | ||||||||| |||||||||| ||| |||||||||||       |||||||||||||||||||||||    
T  11308053 ataatttgaaaaaatgacataattcagtgtaatcataggtgtcgtgtcggtgtcggtgttggacaccgacgcgtgtccgacacc 11307970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 408
Target Start/End: Complemental strand, 18889585 - 18889525
Alignment:
Q  348 gtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctctgct 408  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||  |||| | ||||||||||    
T  18889585 gtgtcggacaccgacgcatgtccgacacccggacacacctaacccaagtagtgtctctgct 18889525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 390
Target Start/End: Complemental strand, 18841089 - 18840977
Alignment:
Q  272 atggagaccgacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccg 371  Q
    ||||| || |||||||  |||||| |||||||||||| |||||| |||||| || ||||| | |      ||||||||||||||||| ||| | ||||||    
T  18841089 atggacactgacacgctgacacaactaataatttgaaaaaattacataattaagtgtaattacaa-----gtgtcggtgtcagacac-gacacatgtccg 18840996  T
Q  372 acaccaggacacacctaat 390  Q
    ||||| |||||||||||||    
T  18840995 acaccgggacacacctaat 18840977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 352
Target Start/End: Complemental strand, 23354710 - 23354648
Alignment:
Q  290 acacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtc 352  Q
    ||||| ||||||||||||  |||| |||||||| || |||||||||| ||| |||||||||||    
T  23354710 acacagataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtc 23354648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 473 - 426
Alignment:
Q  342 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 390  Q
    ||||||||||| ||||| ||||||||||||||||| |||||||||||||    
T  473 gtgtcggtgtcggacac-gacgcgtgtccgacaccgggacacacctaat 426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 392
Target Start/End: Complemental strand, 225263 - 225219
Alignment:
Q  348 gtgtcagacaccgacgcgtgtccgacaccaggacacacctaattc 392  Q
    ||||| ||||| ||||||||| |||||||||||||| ||||||||    
T  225263 gtgtcggacactgacgcgtgttcgacaccaggacacgcctaattc 225219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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