View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1916_low_11 (Length: 387)

Name: NF1916_low_11
Description: NF1916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1916_low_11
NF1916_low_11
[»] chr2 (5 HSPs)
chr2 (82-235)||(38211256-38211408)
chr2 (97-151)||(27085359-27085413)
chr2 (84-151)||(29747136-29747203)
chr2 (82-142)||(31347409-31347469)
chr2 (94-151)||(33125422-33125479)
[»] chr5 (1 HSPs)
chr5 (82-146)||(22301879-22301943)
[»] chr4 (3 HSPs)
chr4 (82-153)||(1505328-1505399)
chr4 (82-153)||(5599240-5599311)
chr4 (97-153)||(3329503-3329559)
[»] chr1 (5 HSPs)
chr1 (82-166)||(14150147-14150231)
chr1 (82-153)||(7898979-7899050)
chr1 (82-153)||(15088250-15088321)
chr1 (82-153)||(22207295-22207366)
chr1 (82-153)||(22210858-22210929)
[»] chr6 (2 HSPs)
chr6 (82-153)||(5131364-5131435)
chr6 (82-153)||(33301152-33301223)
[»] scaffold0060 (1 HSPs)
scaffold0060 (82-153)||(45213-45284)
[»] chr3 (2 HSPs)
chr3 (82-153)||(14521673-14521744)
chr3 (82-153)||(37489363-37489434)
[»] scaffold0158 (1 HSPs)
scaffold0158 (82-153)||(15-86)
[»] scaffold0024 (1 HSPs)
scaffold0024 (87-153)||(63456-63523)
[»] chr8 (1 HSPs)
chr8 (82-138)||(4844448-4844504)
[»] chr7 (1 HSPs)
chr7 (82-153)||(19802237-19802308)


Alignment Details
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 82 - 235
Target Start/End: Complemental strand, 38211408 - 38211256
Alignment:
Q  82 ttgcctacaacttaggatatgtggaactcact-agagcatcttgtttcaccccaatccttttattttatttcataacagcaggttgttcaagccaaagga 180  Q
    ||||||||||||||||||| |||||||||||| |||| ||| ||| ||||||||||||||||||||||||||| | |||||||||||||  | ||| | |    
T  38211408 ttgcctacaacttaggataggtggaactcactgagag-atcctgtctcaccccaatccttttattttatttcagatcagcaggttgttcgtggcaaggaa 38211310  T
Q  181 agacaaacatgaagttgaatgactttaccttcatatgcatgtgtcgtactggttt 235  Q
    ||||||||| || |||||||||| ||| |||||||||||||||||||||| ||||    
T  38211309 agacaaacaagaggttgaatgac-ttatcttcatatgcatgtgtcgtactagttt 38211256  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 27085413 - 27085359
Alignment:
Q  97 gatatgtggaactcactagagcatcttgtttcaccccaatccttttattttattt 151  Q
    ||||||||||||||||||   |||  |||||||||||||||||||||||||||||    
T  27085413 gatatgtggaactcactaagacattatgtttcaccccaatccttttattttattt 27085359  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 29747203 - 29747136
Alignment:
Q  84 gcctacaacttaggatatgtggaactcact-agagcatcttgtttcaccccaatccttttattttattt 151  Q
    ||||||||| |||||||||||||||||||| ||| |||| ||| |||||||||||| ||||| ||||||    
T  29747203 gcctacaacctaggatatgtggaactcactgaga-catcctgtctcaccccaatccctttatcttattt 29747136  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 31347409 - 31347469
Alignment:
Q  82 ttgcctacaacttaggatatgtggaactcact-agagcatcttgtttcaccccaatcctttt 142  Q
    ||||||||||| ||||||| |||||||||||| ||| |||| ||| ||||||||||||||||    
T  31347409 ttgcctacaacctaggataggtggaactcactgaga-catcctgtctcaccccaatcctttt 31347469  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 33125422 - 33125479
Alignment:
Q  94 taggatatgtggaactcactagagcatcttgtttcaccccaatccttttattttattt 151  Q
    ||||||| |||||||||||||   |||| ||| |||||||||||| ||||||||||||    
T  33125422 taggataggtggaactcactaagacatcatgtctcaccccaatccctttattttattt 33125479  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 82 - 146
Target Start/End: Complemental strand, 22301943 - 22301879
Alignment:
Q  82 ttgcctacaacttaggatatgtggaactcactagagcatcttgtttcaccccaatccttttattt 146  Q
    ||||||||||||||||||| |||||||||||||   |||| ||| ||| ||||||||||||||||    
T  22301943 ttgcctacaacttaggataggtggaactcactaagacatcatgtctcatcccaatccttttattt 22301879  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 153
Target Start/End: Complemental strand, 1505399 - 1505328
Alignment:
Q  82 ttgcctacaacttaggatatgtggaactcactagagcatcttgtttcaccccaatccttttattttatttca 153  Q
    ||||||||||| ||||||| |||||||||||||   |||||||| |||||||||||| |||  |||||||||    
T  1505399 ttgcctacaacctaggataggtggaactcactaagacatcttgtctcaccccaatcccttttatttatttca 1505328  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 153
Target Start/End: Complemental strand, 5599311 - 5599240
Alignment:
Q  82 ttgcctacaacttaggatatgtggaactcactagag-catcttgtttcaccccaatccttttattttatttca 153  Q
    ||||||||||| |||||||  ||||||||||| ||| |||||||| ||||||||||||||||  |||||||||    
T  5599311 ttgcctacaacctaggatagatggaactcact-gagacatcttgtctcaccccaatcctttttatttatttca 5599240  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 3329503 - 3329559
Alignment:
Q  97 gatatgtggaactcactagag-catcttgtttcaccccaatccttttattttatttca 153  Q
    |||| |||||||||||| ||| |||||||| ||||||||||||||||| |||||||||    
T  3329503 gataggtggaactcact-gagacatcttgtctcaccccaatccttttactttatttca 3329559  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 14150147 - 14150231
Alignment:
Q  82 ttgcctacaacttaggatatgtggaactcactagag-catcttgtttcaccccaatccttttattttatttcataacagcaggttg 166  Q
    |||||||||  |||||||| |||||||||||  ||| |||| ||| ||||||||||||||||||||||||||| |  |||||||||    
T  14150147 ttgcctacagtttaggataggtggaactcacc-gagacatcatgtctcaccccaatccttttattttatttcagataagcaggttg 14150231  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 153
Target Start/End: Complemental strand, 7899050 - 7898979
Alignment:
Q  82 ttgcctacaacttaggatatgtggaactcactagag-catcttgtttcaccccaatccttttattttatttca 153  Q
    ||||||||||  ||||||| |||||||||||| ||| |||||||| |||||||||||| |||  |||||||||    
T  7899050 ttgcctacaatctaggataggtggaactcact-gagacatcttgtctcaccccaatcccttttatttatttca 7898979  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 153
Target Start/End: Complemental strand, 15088321 - 15088250
Alignment:
Q  82 ttgcctacaacttaggatatgtggaactcact-agagcatcttgtttcaccccaatccttttattttatttca 153  Q
    ||||||||||| ||||||| |||||||||||| ||| |||| ||| |||||||||||| |||  |||||||||    
T  15088321 ttgcctacaacctaggataggtggaactcactgaga-catcctgtctcaccccaatcccttttatttatttca 15088250  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 153
Target Start/End: Complemental strand, 22207366 - 22207295
Alignment:
Q  82 ttgcctacaacttaggatatgtggaactcact-agagcatcttgtttcaccccaatccttttattttatttca 153  Q
    ||||||||||| ||||||| |||||||||||| ||| |||| ||| |||||||||||| |||  |||||||||    
T  22207366 ttgcctacaacctaggataggtggaactcactgaga-catcctgtctcaccccaatcccttttatttatttca 22207295  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 153
Target Start/End: Complemental strand, 22210929 - 22210858
Alignment:
Q  82 ttgcctacaacttaggatatgtggaactcact-agagcatcttgtttcaccccaatccttttattttatttca 153  Q
    ||||||||||| ||||||| |||||||||||| ||| |||| ||| |||||||||||| |||  |||||||||    
T  22210929 ttgcctacaacctaggataggtggaactcactgaga-catcctgtctcaccccaatcccttttatttatttca 22210858  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 153
Target Start/End: Original strand, 5131364 - 5131435
Alignment:
Q  82 ttgcctacaacttaggatatgtggaactcact-agagcatcttgtttcaccccaatccttttattttatttca 153  Q
    ||||||||||| ||||||| |||||||||||| ||| |||||||| |||||||||||| |||  |||||||||    
T  5131364 ttgcctacaacctaggataggtggaactcactgaga-catcttgtctcaccccaatcccttttatttatttca 5131435  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 153
Target Start/End: Original strand, 33301152 - 33301223
Alignment:
Q  82 ttgcctacaacttaggatatgtggaactcactagag-catcttgtttcaccccaatccttttattttatttca 153  Q
    ||||||||||| |||||||  ||||||||||| ||| |||||||| ||||||||||||||||  |||||||||    
T  33301152 ttgcctacaacctaggatagatggaactcact-gagacatcttgtctcaccccaatcctttttatttatttca 33301223  T

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Target: scaffold0060 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 82 - 153
Target Start/End: Original strand, 45213 - 45284
Alignment:
Q  82 ttgcctacaacttaggatatgtggaactcactagagcatcttgtttcaccccaatccttttattttatttca 153  Q
    ||||||||||| |||| ||||||||||||||||   ||| |||| |||||||||||| |||  |||||||||    
T  45213 ttgcctacaacctagggtatgtggaactcactaagacattttgtctcaccccaatcccttttatttatttca 45284  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 82 - 153
Target Start/End: Original strand, 14521673 - 14521744
Alignment:
Q  82 ttgcctacaacttaggatatgtggaactcactagagcatcttgtttcaccccaatccttttattttatttca 153  Q
    ||||||||| | ||||||| |||||||||||||   ||| |||| ||||||||||||||||  |||||||||    
T  14521673 ttgcctacagcctaggataggtggaactcactaagacattttgtctcaccccaatcctttttatttatttca 14521744  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 153
Target Start/End: Complemental strand, 37489434 - 37489363
Alignment:
Q  82 ttgcctacaacttaggatatgtggaactca-ctagagcatcttgtttcaccccaatccttttattttatttca 153  Q
    ||||||||||| ||||||| |||||||||| | ||| |||||||| |||||||||||| |||  |||||||||    
T  37489434 ttgcctacaacctaggataggtggaactcaccgaga-catcttgtctcaccccaatcccttttatttatttca 37489363  T

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Target: scaffold0158 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 153
Target Start/End: Original strand, 15 - 86
Alignment:
Q  82 ttgcctacaacttaggatatgtggaactcact-agagcatcttgtttcaccccaatccttttattttatttca 153  Q
    ||||||||| | ||||||| |||||||||||| ||| ||| |||| ||||||||||||||||  |||||||||    
T  15 ttgcctacagcctaggataggtggaactcactgaga-cattttgtctcaccccaatcctttttatttatttca 86  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 63523 - 63456
Alignment:
Q  87 tacaacttaggatatgtggaactcact-agagcatcttgtttcaccccaatc-cttttattttatttca 153  Q
    |||||||||||||| |||||||||||| ||| |||| |||  |||||||||| ||||||||||||||||    
T  63523 tacaacttaggataggtggaactcactgaga-catcctgtcacaccccaatctcttttattttatttca 63456  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 4844448 - 4844504
Alignment:
Q  82 ttgcctacaacttaggatatgtggaactcactagagcatcttgtttcaccccaatcc 138  Q
    ||||||||||| ||||||| ||||||||||||   ||||| ||| ||||||||||||    
T  4844448 ttgcctacaacctaggataggtggaactcactgcggcatcctgtctcaccccaatcc 4844504  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 153
Target Start/End: Complemental strand, 19802308 - 19802237
Alignment:
Q  82 ttgcctacaacttaggatatgtggaactcactagag-catcttgtttcaccccaatccttttattttatttca 153  Q
    ||||||||| | ||||||| |||||||||||| ||| ||| |||| ||||||||||||||||  |||||||||    
T  19802308 ttgcctacagcctaggataggtggaactcact-gagacattttgtctcaccccaatcctttttatttatttca 19802237  T

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