View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1916_low_12 (Length: 384)
Name: NF1916_low_12
Description: NF1916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1916_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 189 - 369
Target Start/End: Original strand, 21184215 - 21184395
Alignment:
| Q |
189 |
gggtattttggagaaaaagataacagaataaaaataaaaacaatgtttattggtattttagaaatatttgacagaaaaataaaagaagagaatnnnnnnn |
288 |
Q |
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| T |
21184215 |
gggtattttggagaaaaagataacagaataaaaataaaaacaatgtttattggtattttagaaatatttgacagaaaaataaaagaagagaat-aaaaaa |
21184313 |
T |
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| Q |
289 |
nnnnnnnntctctttacctctcaataagaaatcgttttagaata-tttgacagaaaaatagagataggataggataagtatc |
369 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
21184314 |
aaaaaaaatctctttacctctcaaaaagaaatcgttttagaatattttgacagaaaaatagagataggataggataagtatc |
21184395 |
T |
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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 21184082 - 21184115
Alignment:
| Q |
61 |
agaataatttactaaagaataaaacaaaacaaaa |
94 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
21184082 |
agaatattttactaaagaataaaacaaaacaaaa |
21184115 |
T |
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