View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1916_low_15 (Length: 325)

Name: NF1916_low_15
Description: NF1916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1916_low_15
NF1916_low_15
[»] chr5 (2 HSPs)
chr5 (36-319)||(1759281-1759555)
chr5 (129-189)||(1754206-1754265)
[»] chr4 (26 HSPs)
chr4 (36-196)||(27505659-27505809)
chr4 (36-196)||(27479934-27480084)
chr4 (36-196)||(27523360-27523510)
chr4 (36-196)||(27526069-27526219)
chr4 (36-195)||(27516567-27516716)
chr4 (36-195)||(27473925-27474074)
chr4 (36-218)||(27487016-27487188)
chr4 (45-198)||(27513731-27513874)
chr4 (36-196)||(27460511-27460661)
chr4 (36-196)||(27469493-27469643)
chr4 (68-196)||(27502092-27502210)
chr4 (36-196)||(27476720-27476870)
chr4 (125-183)||(27444764-27444822)
chr4 (125-195)||(27466933-27467003)
chr4 (47-181)||(27557533-27557657)
chr4 (125-194)||(27567367-27567436)
chr4 (36-183)||(27498448-27498585)
chr4 (222-280)||(27474102-27474160)
chr4 (45-183)||(27431118-27431246)
chr4 (45-182)||(27501359-27501486)
chr4 (125-196)||(27500295-27500366)
chr4 (227-293)||(27469688-27469754)
chr4 (125-183)||(27554421-27554479)
chr4 (125-160)||(27495648-27495683)
chr4 (36-88)||(27500393-27500445)
chr4 (125-189)||(27507777-27507841)
[»] chr3 (3 HSPs)
chr3 (125-183)||(50904762-50904820)
chr3 (125-187)||(38028732-38028794)
chr3 (125-187)||(38040047-38040109)
[»] chr8 (1 HSPs)
chr8 (125-187)||(21604720-21604782)


Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 36 - 319
Target Start/End: Original strand, 1759281 - 1759555
Alignment:
Q  36 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||      |||||    
T  1759281 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaagcaagctgaggaacaatttgaatacaaccatccaat------gggtg 1759374  T
Q  136 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaatcagcagctctctgaagatatcaaaagaccaatttttgta 235  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||   |||||||| |||||||||||||||||||||||    
T  1759375 gtctcaccattctttgcagagaagaagttttcttagatatcacttctcacttgaattgaatcagc---tctctgaaaatatcaaaagaccaatttttgta 1759471  T
Q  236 caactttagtttcttaccttcaaaagatttttacttttcttgttacttgaatgtaaaacttcatatttctataattcttctctg 319  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1759472 gaactttagtttcttaccttcaaaagatttttacttttcttgttacttggatgtaaaacttcatatttctataattcttctctg 1759555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 1754265 - 1754206
Alignment:
Q  129 atgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttga 189  Q
    |||||||||||||| |||| ||| |||||| || ||||||||||||||||||||| |||||    
T  1754265 atgggtggtctcactattccttgtagagaa-accttttcttagatatcacttctcgcttga 1754206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 36 - 196
Target Start/End: Complemental strand, 27505809 - 27505659
Alignment:
Q  36 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 135  Q
    |||||||||||||||| || |||||||| |||||||||||||||||||    |||||||||||||||||||||||||  ||||||||||      |||||    
T  27505809 tgattcctgtatcatacttgaaccaaacctcattccaagaattgttga----accaagctgaggaacaatttgaatatgaccatccaat------gggtg 27505720  T
Q  136 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 196  Q
    ||||||| |||| ||||||||||||  ||||||||||||||| ||||||||||||||||||    
T  27505719 gtctcactattccttgcagagaagagattttcttagatatcatttctcacttgaattgaat 27505659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 36 - 196
Target Start/End: Original strand, 27479934 - 27480084
Alignment:
Q  36 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 135  Q
    |||||||||||||||| || |||||||||||||||||| | |||||||    |||||||||||||||||||||||||  | ||||||      |||||||    
T  27479934 tgattcctgtatcatacttgaaccaaacatcattccaaaagttgttga----accaagctgaggaacaatttgaatatgatcatcca------atgggtg 27480023  T
Q  136 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 196  Q
    |||||||||||| ||||||||||||| ||||||||||||| | ||||||||||||||||||    
T  27480024 gtctcaccattccttgcagagaagacattttcttagatattaattctcacttgaattgaat 27480084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 36 - 196
Target Start/End: Complemental strand, 27523510 - 27523360
Alignment:
Q  36 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 135  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||| ||    || |||||||||||||||||  ||||||||||      |||||    
T  27523510 tgattcctgtatcatatttgaaccaaacttcattccaagaattgttgagcgaa----gccgaggaacaatttgaatatgaccatccaat------gggtg 27523421  T
Q  136 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 196  Q
    |||| || |||| ||||| ||||||| ||||||||||||| ||||||||||||||||||||    
T  27523420 gtctaactattccttgcaaagaagacattttcttagatattacttctcacttgaattgaat 27523360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 36 - 196
Target Start/End: Complemental strand, 27526219 - 27526069
Alignment:
Q  36 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 135  Q
    |||||||||||||||| || |||||||| ||||||||||||||||||||||||    ||||||||||||||||||||  | |||||||       |||||    
T  27526219 tgattcctgtatcatacttgaaccaaacctcattccaagaattgttgagccaa----gctgaggaacaatttgaatatgatcatccaac------gggtg 27526130  T
Q  136 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 196  Q
    ||||||| |||| |||||||||||||||||||||||| ||||||||||  |||||||||||    
T  27526129 gtctcactattccttgcagagaagacgttttcttagagatcacttctcgtttgaattgaat 27526069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 36 - 195
Target Start/End: Complemental strand, 27516716 - 27516567
Alignment:
Q  36 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 135  Q
    |||| ||| |||||||||| || |||| ||||||||||||||||||||    |||||||||||||||||||||||||  ||||||||||      ||| |    
T  27516716 tgatccctatatcatatttgaagcaaaaatcattccaagaattgttga----accaagctgaggaacaatttgaatatgaccatccaat------ggggg 27516627  T
Q  136 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaa 195  Q
    ||||||| |||| ||||| |||||| ||||||||||||||||||||| ||||||||||||    
T  27516626 gtctcactattccttgcaaagaagaagttttcttagatatcacttctaacttgaattgaa 27516567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 195
Target Start/End: Original strand, 27473925 - 27474074
Alignment:
Q  36 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 135  Q
    |||| ||| |||||||||| || |||| |||||||||||||||| ||||||||   || ||||||||||||||||||  | ||||||      |||||||    
T  27473925 tgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaa---ag-tgaggaacaatttgaatatgatcatcca------atgggtg 27474014  T
Q  136 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaa 195  Q
    |||||||||||| |||| ||||||||||||||||||| |||||||||| |||||||||||    
T  27474015 gtctcaccattccttgcggagaagacgttttcttagacatcacttctcgcttgaattgaa 27474074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 36 - 218
Target Start/End: Original strand, 27487016 - 27487188
Alignment:
Q  36 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 135  Q
    |||| ||| ||||||| ||||||||| |||| || |||||||||||||    |||||||||| ||||||||||||||  | ||||||      |||||||    
T  27487016 tgatccctttatcatacttaaaccaaccatcgtttcaagaattgttga----accaagctgaagaacaatttgaatatgatcatcca------atgggtg 27487105  T
Q  136 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaatcagcagctctctgaagatatca 218  Q
    |||| || |||| ||||| ||||||| ||||||||||||| |||||||||||||||||||| |  || ||| |||||||||||    
T  27487106 gtcttactattccttgcaaagaagacattttcttagatattacttctcacttgaattgaattattagttctttgaagatatca 27487188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 27513874 - 27513731
Alignment:
Q  45 tatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtggtctcacca 144  Q
    ||||||| || |||||||| || ||||||||||||||||    |||||||||| ||||||| ||||||  | ||||||||      |||||||||||| |    
T  27513874 tatcatacttgaaccaaacctcgttccaagaattgttga----accaagctgaagaacaatatgaatatgatcatccaat------gggtggtctcacta 27513785  T
Q  145 ttctttgcagagaagacgttttcttagatatcacttctcacttgaattgaatca 198  Q
    ||| |||||||||||| || ||||||||||||||||||| ||||||||||||||    
T  27513784 ttccttgcagagaagaagtattcttagatatcacttctcgcttgaattgaatca 27513731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 36 - 196
Target Start/End: Original strand, 27460511 - 27460661
Alignment:
Q  36 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 135  Q
    |||| ||| |||||||||| || |||| |||||||||||||||| ||||||||   || ||||||||||||||||||  | ||||||      |||||||    
T  27460511 tgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaa---ag-tgaggaacaatttgaatatgatcatcca------atgggtg 27460600  T
Q  136 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 196  Q
    |||||||||||| ||||||||||||| ||||||| |||||||| |||||||| | ||||||    
T  27460601 gtctcaccattccttgcagagaagacattttcttggatatcacctctcacttaatttgaat 27460661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 196
Target Start/End: Original strand, 27469493 - 27469643
Alignment:
Q  36 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 135  Q
    |||| ||| |||||||||| || ||||||||||| |||||| |||||||||||    ||||| ||||||||||||||  | ||||||      |||||||    
T  27469493 tgatccctatatcatatttgaagcaaacatcattacaagaactgttgagccaa----gctgaagaacaatttgaatatgaacatcca------atgggtg 27469582  T
Q  136 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 196  Q
    |||| || |||| ||||||||||||  |||||||||||||||| |||||||| ||||||||    
T  27469583 gtctaactattccttgcagagaagaaattttcttagatatcacctctcacttcaattgaat 27469643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 196
Target Start/End: Complemental strand, 27502210 - 27502092
Alignment:
Q  68 ttccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtggtctcaccattctttgcagagaagacgttttc 167  Q
    ||||||||||||||||    |||||||||||||||||||||||||  | ||||||||      ||||||||| || |||| ||||||||||||| |||||    
T  27502210 ttccaagaattgttga----accaagctgaggaacaatttgaatatgatcatccaat------gggtggtctaactattccttgcagagaagacattttc 27502121  T
Q  168 ttagatatcacttctcacttgaattgaat 196  Q
    ||||||||||| |||||||| ||||||||    
T  27502120 ttagatatcacctctcacttaaattgaat 27502092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 36 - 196
Target Start/End: Original strand, 27476720 - 27476870
Alignment:
Q  36 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 135  Q
    |||||||||||||||| || |||||||| |||||||||||| || ||||||||   || ||||||||||||||||||  | ||||||      |||||||    
T  27476720 tgattcctgtatcatacttgaaccaaacctcattccaagaactgctgagccaa---ag-tgaggaacaatttgaatatgatcatcca------atgggtg 27476809  T
Q  136 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 196  Q
    |||| || |||| ||||||||||||| ||||||| ||||| || |||||||| ||||||||    
T  27476810 gtctaactattccttgcagagaagacattttcttggatattacctctcacttaaattgaat 27476870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 27444822 - 27444764
Alignment:
Q  125 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctc 183  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||    
T  27444822 tccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctc 27444764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 27466933 - 27467003
Alignment:
Q  125 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaa 195  Q
    |||||||||||||||||| |||| |||||||||||| ||||||||||| |||||||||  |||||||||||    
T  27466933 tccaatgggtggtctcactattccttgcagagaagaagttttcttagacatcacttctagcttgaattgaa 27467003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 181
Target Start/End: Original strand, 27557533 - 27557657
Alignment:
Q  47 tcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtggtctcaccatt 146  Q
    ||||| ||||||||| ||||||| ||||||||| |||    | |||||||||||||||||||||||    ||||||      |||||||||||||| |||    
T  27557533 tcatacttaaaccaaccatcatttcaagaattgctga----atcaagctgaggaacaatttgaatatgttcatcca------atgggtggtctcactatt 27557622  T
Q  147 ctttgcagagaagacgttttcttagatatcacttc 181  Q
    |  ||||||||||| ||||||||||||||||||||    
T  27557623 ccatgcagagaagatgttttcttagatatcacttc 27557657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 27567367 - 27567436
Alignment:
Q  125 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattga 194  Q
    |||||||||||||||||| |||| |||||| ||||| | |||||||||  ||||||||||||||||||||    
T  27567367 tccaatgggtggtctcacaattccttgcagcgaagatgctttcttagaactcacttctcacttgaattga 27567436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 183
Target Start/End: Original strand, 27498448 - 27498585
Alignment:
Q  36 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 135  Q
    |||| ||| ||||||| || |||||| |||| |||||||| |||||||    ||||||| ||||||||||| |||||  | ||||||      |||||||    
T  27498448 tgatccctatatcatacttgaaccaaccatcgttccaagacttgttga----accaagccgaggaacaattcgaatatgatcatcca------atgggtg 27498537  T
Q  136 gtctcaccattctttgcagagaagacgttttcttagatatcacttctc 183  Q
    ||||||| |||| |||| |||||||| | |||||||||||||||||||    
T  27498538 gtctcactattccttgcggagaagacatgttcttagatatcacttctc 27498585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 280
Target Start/End: Original strand, 27474102 - 27474160
Alignment:
Q  222 gaccaatttttgtacaactttagtttcttaccttcaaaagatttttacttttcttgtta 280  Q
    ||||||||||||||  |||||||||||| |||||||||||||||| |||||| ||||||    
T  27474102 gaccaatttttgtagcactttagtttctaaccttcaaaagattttcacttttgttgtta 27474160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 183
Target Start/End: Complemental strand, 27431246 - 27431118
Alignment:
Q  45 tatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtggtctcacca 144  Q
    ||||||| || |||||| | ||||| |||||||||||||    | ||||| ||||||||||||| |||  |||||||||  ||    ||||||||||| |    
T  27431246 tatcatacttgaaccaaccgtcatttcaagaattgttga----atcaagccgaggaacaatttggatatgaccatccaa--cc----ggtggtctcacaa 27431157  T
Q  145 ttctttgcagagaagacgttttcttagatatcacttctc 183  Q
    ||| |||||||||||||||||||||| |||| |||||||    
T  27431156 ttccttgcagagaagacgttttcttaaatattacttctc 27431118  T

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Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 182
Target Start/End: Original strand, 27501359 - 27501486
Alignment:
Q  45 tatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtggtctcacca 144  Q
    ||||||| ||||||||| |||  || ||||| |||||||    ||||||| |||||||||||||||||| | |||||||       |||||||||||| |    
T  27501359 tatcatacttaaaccaaccattgtttcaagacttgttga----accaagccgaggaacaatttgaatacgatcatccaac------gggtggtctcacta 27501448  T
Q  145 ttctttgcagagaagacgttttcttagatatcacttct 182  Q
    ||| ||| ||||||||| | ||||||||||||||||||    
T  27501449 ttccttgtagagaagacatgttcttagatatcacttct 27501486  T

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Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 27500366 - 27500295
Alignment:
Q  125 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 196  Q
    ||||||||||||  |||| |||| ||||||||||||| ||||||||||  ||||||||  ||||||||||||    
T  27500366 tccaatgggtggcatcactattccttgcagagaagaccttttcttagaattcacttcttgcttgaattgaat 27500295  T

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Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 293
Target Start/End: Original strand, 27469688 - 27469754
Alignment:
Q  227 atttttgtacaactttagtttcttaccttcaaaagatttttacttttcttgttacttgaatgtaaaa 293  Q
    |||||||||  ||||||||||| ||||||||||||||||| |||||| |||| | ||| ||||||||    
T  27469688 atttttgtagcactttagtttcataccttcaaaagattttcacttttgttgtaatttggatgtaaaa 27469754  T

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Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 27554421 - 27554479
Alignment:
Q  125 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctc 183  Q
    ||||| |||| ||||||| |||| ||| ||||||||||||||||||||||| |||||||    
T  27554421 tccaacgggtagtctcacaattccttgtagagaagacgttttcttagatattacttctc 27554479  T

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Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 160
Target Start/End: Original strand, 27495648 - 27495683
Alignment:
Q  125 tccaatgggtggtctcaccattctttgcagagaaga 160  Q
    ||||||||||||||||||||||| ||||||||||||    
T  27495648 tccaatgggtggtctcaccattccttgcagagaaga 27495683  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 27500445 - 27500393
Alignment:
Q  36 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaa 88  Q
    |||| ||| ||||||| ||||||||||  ||||||||||||||| ||||||||    
T  27500445 tgatccctatatcatacttaaaccaaagttcattccaagaattgctgagccaa 27500393  T

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Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 27507841 - 27507777
Alignment:
Q  125 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttga 189  Q
    ||||||||||||||| || |||| |||   ||||||  ||||||||||||||||||||| |||||    
T  27507841 tccaatgggtggtcttacaattccttgtgaagaagatcttttcttagatatcacttctcgcttga 27507777  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 50904820 - 50904762
Alignment:
Q  125 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctc 183  Q
    |||||||||||| |||||||||| |||||||||||| ||||| ||  ||||||||||||    
T  50904820 tccaatgggtggcctcaccattccttgcagagaagaggtttttttgcatatcacttctc 50904762  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 38028794 - 38028732
Alignment:
Q  125 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcactt 187  Q
    ||||||||| || ||||| |||| ||||| |||||||||||||||  |||| |||||||||||    
T  38028794 tccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctcactt 38028732  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 38040109 - 38040047
Alignment:
Q  125 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcactt 187  Q
    ||||||||| || ||||| |||| ||||| |||||||||||||||  |||| |||||||||||    
T  38040109 tccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctcactt 38040047  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 21604782 - 21604720
Alignment:
Q  125 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcactt 187  Q
    ||||||||| || ||||| |||| ||||| |||||||||||||||  |||| |||||||||||    
T  21604782 tccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctcactt 21604720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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