View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1916_low_16 (Length: 307)
Name: NF1916_low_16
Description: NF1916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1916_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 149 - 292
Target Start/End: Original strand, 40787411 - 40787554
Alignment:
| Q |
149 |
aaacctcttatttaacttctccactaaaactttcatatccattgttcccttcacagtcactatctctttctccttatctatagtcacatgctgaacacct |
248 |
Q |
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| T |
40787411 |
aaacctcttctttaacttctccactaaaactttcatatccattgttcccttcacagtcactatctctttctccttatctatagtcacatgctgaacacct |
40787510 |
T |
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| Q |
249 |
acacccaaatttcattccaaaacacatcaaccaacaccattttt |
292 |
Q |
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| T |
40787511 |
acacccaaatttcattccaaaaaacatcaaccaacaccattttt |
40787554 |
T |
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