View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1916_low_18 (Length: 293)
Name: NF1916_low_18
Description: NF1916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1916_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 130 - 274
Target Start/End: Original strand, 43232045 - 43232189
Alignment:
| Q |
130 |
atataagacctctacttgatatttgttacacacagaaagctaaattgggattctcttggaagatgatttagaattcaaaatttcaaatctattgtgtgtg |
229 |
Q |
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| T |
43232045 |
atatgagacctctacttgatatttgttacacacagaaagctaaattgggattctcttggaagatgatgcagaattcaaaatttcaaatctattgtgtgtg |
43232144 |
T |
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| Q |
230 |
tgtaaatgccttcatgatcccttattacatacttatttaggttga |
274 |
Q |
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| T |
43232145 |
tgtaaatgccttcatgatcccttattacatacttatttacgttga |
43232189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 43231969 - 43232018
Alignment:
| Q |
85 |
ccaaaaccataatatcatattatgtttacgggtcatcttacttgtatata |
134 |
Q |
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| T |
43231969 |
ccaaaaccataatatcatattatgtttatgggtcatcttacttgtatata |
43232018 |
T |
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