View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1916_low_19 (Length: 291)
Name: NF1916_low_19
Description: NF1916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1916_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 2600605 - 2600334
Alignment:
| Q |
1 |
tcttgacgtgatcttgatttataccttgtgcttaagtggtggctcattttttattaattaaatattttcccttatgagatagggctttcggagctggttt |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2600605 |
tcttgacgtgatcgtgatttataccttgtgcttaagtggtggctcattttttattaattaaatattttcccttatgagatagggctttcggagctggttt |
2600506 |
T |
|
| Q |
101 |
atcaaatgtgaagtacttctcagaagcaagtgcagcaggagaaagaataatggaaatgataaaacaaattccaaagattgattctgaaaatatggaaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2600505 |
atcaaatgtgaagtacttctcagaagcaagtgcagcaggagaaagaataatggaaatgataaaacaaattccaaagattgattctgaaaatatggaaggt |
2600406 |
T |
|
| Q |
201 |
gaaattatagagaaagttttgggggaagttgagttcaaccatgttgaatttgtgtatccatcaagaccagaa |
272 |
Q |
| |
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|||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2600405 |
gaaattctagagaaagtcttgggggaagttgagttcaacaatgttgaatttgtgtatccatcaagaccagaa |
2600334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 27 - 272
Target Start/End: Complemental strand, 2573013 - 2572768
Alignment:
| Q |
27 |
tgtgcttaagtggtggctcattttttattaattaaatattttcccttatgagatagggctttcggagctggtttatcaaatgtgaagtacttctcagaag |
126 |
Q |
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||||||||| | ||| ||| ||||||||||| || ||||||| |||||||| |||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
2573013 |
tgtgcttaaattgtgcctctttttttattaactatatatttttatttatgagacagggctttcggaactagtttatcaaatgtgaagtacttctcagaag |
2572914 |
T |
|
| Q |
127 |
caagtgcagcaggagaaagaataatggaaatgataaaacaaattccaaagattgattctgaaaatatggaaggtgaaattatagagaaagttttggggga |
226 |
Q |
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| T |
2572913 |
caagtgcagcaggagaaagaataatggaagtgataaaaagagttccaaagatagattctgaaaacatggaaggtgaaattatagagaaagtcttggggga |
2572814 |
T |
|
| Q |
227 |
agttgagttcaaccatgttgaatttgtgtatccatcaagaccagaa |
272 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2572813 |
agttgagttcaaccatgttgaatttgtgtatccatcaagaccagaa |
2572768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 71 - 272
Target Start/End: Complemental strand, 2677805 - 2677604
Alignment:
| Q |
71 |
cttatgagatagggctttcggagctggtttatcaaatgtgaagtacttctcagaagcaagtgcagcaggagaaagaataatggaaatgataaaacaaatt |
170 |
Q |
| |
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|||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | || |
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| T |
2677805 |
cttatgtggtagggctttaggagctggtttatcaaatgtgaagtacttctcagaagcaagtgttgcaggagaaagaataatggaaatgataaaaagagtt |
2677706 |
T |
|
| Q |
171 |
ccaaagattgattctgaaaatatggaaggtgaaattatagagaaagttttgggggaagttgagttcaaccatgttgaatttgtgtatccatcaagaccag |
270 |
Q |
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|||||||| ||||||||||| || |||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2677705 |
ccaaagatagattctgaaaacatcgaaggtgaaattctagagaaagtcttaggggaagttgagttcaaccatgttgaatttgtgtatccatcaagaccag |
2677606 |
T |
|
| Q |
271 |
aa |
272 |
Q |
| |
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|| |
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| T |
2677605 |
aa |
2677604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 81 - 272
Target Start/End: Original strand, 2586099 - 2586290
Alignment:
| Q |
81 |
agggctttcggagctggtttatcaaatgtgaagtacttctcagaagcaagtgcagcaggagaaagaataatggaaatgataaaacaaattccaaagattg |
180 |
Q |
| |
|
|||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| |
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| T |
2586099 |
agggctttaggagctggtatgtcaaatgtgaagtacttctcagaagcaagtgcagcaggagaaagaataatggaagtgataaaaagagttccaaagattg |
2586198 |
T |
|
| Q |
181 |
attctgaaaatatggaaggtgaaattatagagaaagttttgggggaagttgagttcaaccatgttgaatttgtgtatccatcaagaccagaa |
272 |
Q |
| |
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|||| ||||| |||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2586199 |
attccgaaaacatggaaggtgaaattatagagaaagtgtcgggggaagttgaattcaaccatgttgaatttgtgtatccatcaagaccagaa |
2586290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 97 - 272
Target Start/End: Original strand, 2448397 - 2448572
Alignment:
| Q |
97 |
gtttatcaaatgtgaagtacttctcagaagcaagtgcagcaggagaaagaataatggaaatgataaaacaaattccaaagattgattctgaaaatatgga |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||| || ||||||||||||||||| |
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| T |
2448397 |
gtttatcaaatgtgaagtacttctcagaagcaagtgttgcaggagaaagaataatggaaatgataaaaagagttccaaaaatagattctgaaaatatgga |
2448496 |
T |
|
| Q |
197 |
aggtgaaattatagagaaagttttgggggaagttgagttcaaccatgttgaatttgtgtatccatcaagaccagaa |
272 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2448497 |
aggtgaaattctagagaaagtcttgggggaagttgaattcaaccatgttgaatttgtgtatccatcaagaccagaa |
2448572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 54 - 272
Target Start/End: Complemental strand, 2645384 - 2645166
Alignment:
| Q |
54 |
ttaattaaatattttcccttatgagatagggctttcggagctggtttatcaaatgtgaagtacttctcagaagcaagtgcagcaggagaaagaataatgg |
153 |
Q |
| |
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||||||| ||||||| ||||||| || ||| |||| ||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
2645384 |
ttaattatatatttttccttatgtgacaggactttaggagctgttttatcaaatgtgaagtacttttcagaagcaagtgtagcaggagaaagaataatgg |
2645285 |
T |
|
| Q |
154 |
aaatgataaaacaaattccaaagattgattctgaaaatatggaaggtgaaattatagagaaagttttgggggaagttgagttcaaccatgttgaatttgt |
253 |
Q |
| |
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| ||||||| | |||||||||||||||||||||| |||||||| || ||| ||||||||||||| || |||||||| || ||||||||||||||||| |
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| T |
2645284 |
atgtgataaatagagttccaaagattgattctgaaaacatggaaggagagattctagagaaagttttaggagaagttgaatttaaccatgttgaatttgt |
2645185 |
T |
|
| Q |
254 |
gtatccatcaagaccagaa |
272 |
Q |
| |
|
||||||||||||||||||| |
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| T |
2645184 |
gtatccatcaagaccagaa |
2645166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 79 - 272
Target Start/End: Original strand, 2432512 - 2432705
Alignment:
| Q |
79 |
atagggctttcggagctggtttatcaaatgtgaagtacttctcagaagcaagtgcagcaggagaaagaataatggaaatgataaaacaaattccaaagat |
178 |
Q |
| |
|
|||||||||| ||| || |||| |||||||||| ||||||| |||||||||||| ||||||||||||||||||||| |||||||| | |||||| ||| |
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| T |
2432512 |
atagggcttttggaacttgtttctcaaatgtgaggtacttcgcagaagcaagtgtggcaggagaaagaataatggaagtgataaaaagagttccaacgat |
2432611 |
T |
|
| Q |
179 |
tgattctgaaaatatggaaggtgaaattatagagaaagttttgggggaagttgagttcaaccatgttgaatttgtgtatccatcaagaccagaa |
272 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2432612 |
agattctgaaaacatggaaggtgaaattatagagaaagtcttgggggaagttgagttcaacaatgttgaatttgtgtatccatcaagaccagaa |
2432705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 81 - 272
Target Start/End: Original strand, 2619789 - 2619980
Alignment:
| Q |
81 |
agggctttcggagctggtttatcaaatgtgaagtacttctcagaagcaagtgcagcaggagaaagaataatggaaatgataaaacaaattccaaagattg |
180 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| | ||||||| || | |
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| T |
2619789 |
agggctttaggagctggtctatcaaatgtgaagtacttctcagaggcaagtgttgcaggagaaagaataatggaaatgataaatagagttccaaaaatag |
2619888 |
T |
|
| Q |
181 |
attctgaaaatatggaaggtgaaattatagagaaagttttgggggaagttgagttcaaccatgttgaatttgtgtatccatcaagaccagaa |
272 |
Q |
| |
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||||| |||| ||||||||||||||| |||||||||| | ||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2619889 |
attctaaaaacatggaaggtgaaattctagagaaagtgtcagggaaagttgaattcaaccatgttgaatttgtgtatccatcaagaccagaa |
2619980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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