View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1916_low_21 (Length: 285)
Name: NF1916_low_21
Description: NF1916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1916_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 673596 - 673323
Alignment:
| Q |
1 |
catctttctcttcaaagaattccacttcccctttccatccactcttcttcacagcctcataatatctttctgatctgtccctaaagagaagatgatcctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
673596 |
catctttctcttcaaagaattccacttcccctttccatccactcttcttcacagcctcaaaatatctttctgatctgtccctaaagagaagttgatcctt |
673497 |
T |
|
| Q |
101 |
tccagcagcagtaataagcatcttggaacaaccaagtgtagccaaactaggtgccccagaagccaatggattgatcatagcgttatctaacccaccagga |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
673496 |
tccagcagcagtaataagcatcctggaacaaccaagtgtagccaaactaggtgccccagaagccaatggattgatcatagggttatctaacccaccagga |
673397 |
T |
|
| Q |
201 |
gcagaagggtatgcaaacttccaaatcctagactgtaaagtctcctcaaaccctataacaggttcttcccctat |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
673396 |
gcagaagggtatgcaaacttccaaatcctagactgtaaagtctcctcaaaccctataacaggttcttcccctat |
673323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 15233747 - 15233799
Alignment:
| Q |
1 |
catctttctcttcaaagaattccacttcccctttccatccactcttcttcaca |
53 |
Q |
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| T |
15233747 |
catctttctcttcaaagaattccaatttccctttccacccactattcttcaca |
15233799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 17473785 - 17473733
Alignment:
| Q |
1 |
catctttctcttcaaagaattccacttcccctttccatccactcttcttcaca |
53 |
Q |
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|||||||||||||||||||||||| || ||| ||||| ||||| ||||||||| |
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| T |
17473785 |
catctttctcttcaaagaattccaatttcccattccacccactattcttcaca |
17473733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 17842052 - 17841997
Alignment:
| Q |
9 |
tcttcaaagaattccacttcccctttccatccactcttcttcacagcctcataata |
64 |
Q |
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|||||||| ||||||| || ||||||||| ||||||||||||||| ||||||||| |
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| T |
17842052 |
tcttcaaacaattccaatttccctttccaaccactcttcttcacaagctcataata |
17841997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 47301915 - 47301860
Alignment:
| Q |
9 |
tcttcaaagaattccacttcccctttccatccactcttcttcacagcctcataata |
64 |
Q |
| |
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|||||||| ||||||| || ||||||||| ||||||||||||||| ||||||||| |
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| T |
47301915 |
tcttcaaacaattccaatttccctttccaaccactcttcttcacaagctcataata |
47301860 |
T |
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