View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1916_low_28 (Length: 248)
Name: NF1916_low_28
Description: NF1916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1916_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 31876153 - 31875909
Alignment:
| Q |
1 |
ctttgtgcaatgtggggaccccttgtgtgttgcattccagaaaaaa-gataaacttccttgtgttgatgcaggtatgaataaaccctgcaagaagttatg |
99 |
Q |
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| T |
31876153 |
ctttgtgcaatgtggggaccccttgtgtgttgcattccagaaaaaaagataaacttccttgtgttgatgcaggtatgaataaaccctgcaagaagttatg |
31876054 |
T |
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| Q |
100 |
tgcggataaaactggctatatatgtagacggtcttcaaactaagggtttcctagtacaagacaacattcccttagaaagctctgatcgcactttacagcg |
199 |
Q |
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| T |
31876053 |
tgcggataaaactggctatatatgtagacggtcttcaaactaagggtttcctagtacaagacaacattcccttagaaagctctgatcgcactttacagcg |
31875954 |
T |
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| Q |
200 |
tcctaagctggcattcgggtgagtcacctaagattaattggttagat |
246 |
Q |
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| T |
31875953 |
tcctaagctggcattcgg--gagtcacctaagattaattggttagat |
31875909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 226
Target Start/End: Complemental strand, 31974298 - 31974199
Alignment:
| Q |
131 |
tcttcaaactaagggtttcctagtacaagaca-ac---attcccttagaaagctctgatcgcactttacagcgtcctaagctggcattcgggtgagtcac |
226 |
Q |
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| T |
31974298 |
tcttgaaactaaaggtttcctagtaaaagacagacagtattcccattgaaagctctgatcgcactttacagcgccctgaggtcgcattcgggtgattcac |
31974199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 31935942 - 31935906
Alignment:
| Q |
158 |
agacaacattcccttagaaagctctgatcgcacttta |
194 |
Q |
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| T |
31935942 |
agacaatattcccatagaaagctctgatcgcacttta |
31935906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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