View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1916_low_31 (Length: 236)
Name: NF1916_low_31
Description: NF1916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1916_low_31 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 9481597 - 9481371
Alignment:
| Q |
1 |
ataagaatgtagaaaattaaagtgttgaatacacatataaaaattaagggtgtcaaaataaaagagtttcaaaataatgaatacgacnnnnnnnnnnnng |
100 |
Q |
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| T |
9481597 |
ataagaatgtaaaagattaaaatgttgaatacacatataaaaataaggggtgtcaaaataaaagagtttcaaattaatgaatacgacatat--------g |
9481506 |
T |
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| Q |
101 |
ttgtcgtattccaatccaatccaactttggacgttacaatgaagttttgttaattgacatttggcaatccgtgattaagaatattataatcttaataaag |
200 |
Q |
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| T |
9481505 |
ttgtcatattccaatccaatccaactttggacgttacaatgaagttttgttaattgacatttggcaatccgtgattaagaatattataatcttaataaag |
9481406 |
T |
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| Q |
201 |
tataagtaaagagaggttaagttaaattaagtaaag |
236 |
Q |
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| T |
9481405 |
tataagt-aagagaggttaagttaaattaagtaaag |
9481371 |
T |
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