View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1916_low_33 (Length: 227)
Name: NF1916_low_33
Description: NF1916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1916_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 4630037 - 4630103
Alignment:
| Q |
145 |
tttatgagagtaagatgcaagacgaaaccagcaatgaaaattaccaactctatacataataacattc |
211 |
Q |
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| T |
4630037 |
tttatgagagtaagatgcaagacgaaaccagcaatgaaaattaccaactctatacataataacattc |
4630103 |
T |
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Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 4629902 - 4629973
Alignment:
| Q |
10 |
gcataggtagatagctgaccaacccacatcctaaaacaatcgattgtacaaaaacccaaaccgagaaagagc |
81 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4629902 |
gcataggtaggtagctgaccaatccacatcctaaaacaatcgattgtacaaaaacccaaaccgagaaagagc |
4629973 |
T |
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