View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1916_low_37 (Length: 217)
Name: NF1916_low_37
Description: NF1916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1916_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 38868282 - 38868094
Alignment:
| Q |
14 |
cagagaggccaccaaagtaacacaaaaacgcaccaaaattcatccctctagaaactataaaagttgctaatagctgcctaaaccagaattgcatcagatg |
113 |
Q |
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| T |
38868282 |
cagagaggccaccaaagtaacacaaaaacgcaccaaaattcatccctctagaaactataaaagttgctaatagctgcctaaaccagaattgcatcagatg |
38868183 |
T |
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| Q |
114 |
ctacattgttaatttccatttgagtatgaaaatggatatctattgtttggcatagttatgttgctataaaaggtgtttgctgtgatttt |
202 |
Q |
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| T |
38868182 |
ctacattgttaatttccatttgagtatgaaaatggatatctattgtttggcatagttatgttgctgtaaaaggtgtttgctgtgatttt |
38868094 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 165
Target Start/End: Original strand, 3046793 - 3046838
Alignment:
| Q |
120 |
tgttaatttccatttgagtatgaaaatggatatctattgtttggca |
165 |
Q |
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| T |
3046793 |
tgttaatttccatttgagtatgaaagttgatatctcttctttggca |
3046838 |
T |
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