View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1916_low_39 (Length: 203)
Name: NF1916_low_39
Description: NF1916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1916_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 4e-74; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 24694238 - 24694070
Alignment:
| Q |
18 |
ccaaccacttcaaatcatcatcgtctttatctagttttatgtcggttccaccttcccatttaggtattttcacttgaaacctaggtccaataggaataac |
117 |
Q |
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| T |
24694238 |
ccaaccacttcaaaccatcatcgtcattatctagttttatgtcggttccaccttcccatttaggtattttcacttgaaacctaggtccaatgggaataac |
24694139 |
T |
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| Q |
118 |
gggtcttagaagataattacaactagcagttaaaaaattgttgagtgagcaaacaagttccatgtcttc |
186 |
Q |
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| T |
24694138 |
gggtcttagtagatgattacacctaggagttaaaaaattgttgagtgagcaaacaagttccatgtcttc |
24694070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 24478858 - 24479026
Alignment:
| Q |
18 |
ccaaccacttcaaatcatcatcgtctttatctagttttatgtcggttccaccttcccatttaggtattttcacttgaaacctaggtccaataggaataac |
117 |
Q |
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| T |
24478858 |
ccaaccacttcaaaccatcatcgtcgttacctagttttatgtaggttccgtcttcccatttaggtatttttgcttgaaacctaggtccaatgggaataat |
24478957 |
T |
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| Q |
118 |
gggtcttagaagataattacaactagcagttaaaaaattgttgagtgagcaaacaagttccatgtcttc |
186 |
Q |
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| T |
24478958 |
aggtcttggaatatgattacatctagcagttaaaaaattgtcgaatgatcgaacaagttccatgtcttc |
24479026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 55 - 137
Target Start/End: Original strand, 24455605 - 24455687
Alignment:
| Q |
55 |
tatgtcggttccaccttcccatttaggtattttcacttgaaacctaggtccaataggaataacgggtcttagaagataattac |
137 |
Q |
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| T |
24455605 |
tatgttggttacaccttcccatttaggaacttttgcttgaaaccttggtccaatgggaataactagtcttggaagatgattac |
24455687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 33 - 186
Target Start/End: Original strand, 41369383 - 41369536
Alignment:
| Q |
33 |
catcatcgtctttatctagttttatgtcggttccaccttcccatttaggtattttcacttgaaacctaggtccaataggaataacgggtcttagaagata |
132 |
Q |
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||||||| || ||| ||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| ||||||| |||||| |||||| |
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| T |
41369383 |
catcatcatcattacctagttttatgtcagttccaccttcccatttaggtatttttgcttgaaatctaggtccaatgggaataattggtcttggaagatg |
41369482 |
T |
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| Q |
133 |
attacaactagcagttaaaaaattgttgagtgagcaaacaagttccatgtcttc |
186 |
Q |
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| T |
41369483 |
attatccctggcaggtaaaaaattgttgcgtgagcgaacaagatccatgtcttc |
41369536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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