View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1916_low_4 (Length: 503)

Name: NF1916_low_4
Description: NF1916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1916_low_4
NF1916_low_4
[»] chr4 (22 HSPs)
chr4 (6-489)||(52986200-52986678)
chr4 (175-233)||(47789380-47789438)
chr4 (286-379)||(24418246-24418339)
chr4 (286-416)||(52831390-52831524)
chr4 (298-381)||(2733406-2733488)
chr4 (251-394)||(17425650-17425793)
chr4 (176-228)||(17425588-17425640)
chr4 (286-350)||(31736149-31736213)
chr4 (173-223)||(52327445-52327495)
chr4 (168-233)||(39276512-39276577)
chr4 (297-354)||(50570375-50570432)
chr4 (173-253)||(52831573-52831651)
chr4 (168-228)||(41173919-41173979)
chr4 (177-233)||(44555585-44555641)
chr4 (168-227)||(21501772-21501831)
chr4 (287-378)||(39276332-39276423)
chr4 (171-233)||(3535298-3535360)
chr4 (180-233)||(20530490-20530543)
chr4 (168-233)||(34812677-34812742)
chr4 (173-233)||(24418116-24418175)
chr4 (173-233)||(30802427-30802486)
chr4 (292-364)||(55723237-55723309)
[»] chr3 (10 HSPs)
chr3 (251-413)||(43822474-43822625)
chr3 (168-233)||(32582594-32582658)
chr3 (263-320)||(38684749-38684806)
chr3 (173-233)||(20873072-20873132)
chr3 (346-397)||(32645704-32645755)
chr3 (287-378)||(37334472-37334563)
chr3 (251-329)||(30837-30915)
chr3 (258-304)||(1384229-1384275)
chr3 (168-225)||(3729869-3729926)
chr3 (168-233)||(9198050-9198115)
[»] chr1 (25 HSPs)
chr1 (118-233)||(35058684-35058802)
chr1 (251-321)||(20791937-20792007)
chr1 (168-233)||(1714041-1714106)
chr1 (286-416)||(7274581-7274715)
chr1 (251-320)||(42747642-42747711)
chr1 (265-329)||(10518256-10518320)
chr1 (168-228)||(21516511-21516571)
chr1 (173-233)||(30173406-30173466)
chr1 (168-228)||(32348410-32348470)
chr1 (286-394)||(32602760-32602868)
chr1 (168-239)||(3160982-3161053)
chr1 (168-223)||(32602949-32603004)
chr1 (168-233)||(3949640-3949705)
chr1 (251-379)||(21516625-21516754)
chr1 (173-233)||(23908830-23908890)
chr1 (168-228)||(31117601-31117661)
chr1 (173-224)||(20791823-20791874)
chr1 (173-224)||(31795359-31795410)
chr1 (288-339)||(46315642-46315693)
chr1 (298-368)||(32359169-32359239)
chr1 (342-387)||(9496771-9496816)
chr1 (289-379)||(31117739-31117831)
chr1 (168-217)||(32359334-32359383)
chr1 (286-339)||(37131512-37131565)
chr1 (180-228)||(35926534-35926582)
[»] scaffold0010 (1 HSPs)
scaffold0010 (168-228)||(166743-166803)
[»] chr8 (15 HSPs)
chr8 (168-233)||(2111014-2111079)
chr8 (180-233)||(8407586-8407639)
chr8 (168-233)||(35764724-35764789)
chr8 (168-228)||(43408678-43408738)
chr8 (168-239)||(3346113-3346184)
chr8 (174-228)||(5111518-5111572)
chr8 (168-253)||(6078472-6078556)
chr8 (168-253)||(6082404-6082488)
chr8 (168-217)||(12524607-12524656)
chr8 (168-233)||(28947321-28947386)
chr8 (168-228)||(925986-926046)
chr8 (174-210)||(21367097-21367133)
chr8 (173-233)||(25019505-25019565)
chr8 (181-233)||(25099576-25099628)
chr8 (168-224)||(37740756-37740812)
[»] chr7 (15 HSPs)
chr7 (290-377)||(883719-883806)
chr7 (290-377)||(1243048-1243135)
chr7 (173-228)||(3837088-3837143)
chr7 (173-251)||(28175451-28175528)
chr7 (189-252)||(883864-883925)
chr7 (189-252)||(1243193-1243254)
chr7 (175-233)||(87160-87218)
chr7 (188-233)||(44235370-44235415)
chr7 (169-233)||(13438325-13438389)
chr7 (168-228)||(19683451-19683511)
chr7 (251-305)||(12473109-12473163)
chr7 (168-225)||(2525296-2525353)
chr7 (168-221)||(44235317-44235370)
chr7 (180-233)||(44571446-44571499)
chr7 (170-253)||(28543533-28543614)
[»] chr2 (14 HSPs)
chr2 (173-228)||(15967968-15968023)
chr2 (174-233)||(27679230-27679289)
chr2 (285-363)||(31062936-31063014)
chr2 (173-227)||(42139530-42139584)
chr2 (290-350)||(40909918-40909978)
chr2 (167-228)||(31063103-31063164)
chr2 (173-233)||(21721919-21721979)
chr2 (168-228)||(27863874-27863934)
chr2 (346-394)||(38356778-38356826)
chr2 (189-253)||(44984222-44984285)
chr2 (173-228)||(30804384-30804439)
chr2 (189-251)||(40910036-40910097)
chr2 (168-233)||(28249824-28249889)
chr2 (290-350)||(44984345-44984405)
[»] chr5 (13 HSPs)
chr5 (187-233)||(1621438-1621484)
chr5 (251-321)||(6462367-6462437)
chr5 (288-362)||(9004814-9004888)
chr5 (167-226)||(32046916-32046975)
chr5 (260-321)||(13838853-13838914)
chr5 (168-221)||(17902799-17902852)
chr5 (168-234)||(28363538-28363604)
chr5 (188-233)||(17259606-17259651)
chr5 (168-225)||(41892772-41892829)
chr5 (173-233)||(2942068-2942128)
chr5 (173-217)||(5390446-5390490)
chr5 (180-228)||(31677298-31677346)
chr5 (173-233)||(34640178-34640238)
[»] scaffold0022 (1 HSPs)
scaffold0022 (143-234)||(84828-84915)
[»] chr6 (7 HSPs)
chr6 (173-225)||(724711-724763)
chr6 (173-233)||(34544423-34544483)
chr6 (168-223)||(9749812-9749867)
chr6 (175-233)||(1288437-1288495)
chr6 (176-253)||(13692501-13692577)
chr6 (168-233)||(29052696-29052761)
chr6 (168-228)||(8014427-8014487)
[»] scaffold0004 (1 HSPs)
scaffold0004 (168-227)||(338918-338977)


Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 6 - 489
Target Start/End: Original strand, 52986200 - 52986678
Alignment:
Q  6 aaggtggatatgacattccttctaacacaagtttttgttttgctaatgacagaatcatgttgaaatagagtgagtataataaggctttcattcacaaaaa 105  Q
    |||||| | |||||||||||| ||| || | |||||||||||||| ||||| | |||| ||||||||||||||||| ||||||||| || ||   |||||    
T  52986200 aaggtgtaaatgacattccttttaaaaccattttttgttttgctagtgacatattcattttgaaatagagtgagtagaataaggctctctttggtaaaaa 52986299  T
Q  106 taaataaatatcggatagctgataagctaacgtataacagacgacatataagctagcttatagattaaatttgtagtgtatggtaaaattagcggttgaa 205  Q
    |||||||||| ||||||| |||||||||||||||||  ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52986300 taaataaatagcggatagttgataagctaacgtatagtagatgacttataagctagcttatagattaaatttgtagtgtatggtaaaattagcggttgaa 52986399  T
Q  206 gtagcttctaaatatgaaatgacctaaattaaatgtgtatttaattaaaatggagataaaaagtgatatgctataagcgttaagctataaactacttgaa 305  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52986400 gtagcttctaaatatgaaatgacctaaattaaatgtgtacttaattaaaatggagataaaaagtgatatgctataagcgttaagctataaactacttgaa 52986499  T
Q  306 ctagcttatcaaaaactgttataatctcatgaaataaagttataaactcgtgtaaaaatgacaattatcaaacaaatcttttataatcacacttataagc 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  52986500 ctagcttatcaaaaactgttataatctcatgaaataaagttataaactcgtgtaaaaatgacaattatcaaacaaatctcttataatcacacttataagc 52986599  T
Q  406 tataagctatacctgctcccgaacatcatcatgaggtgaactgagtagattgacaaacattggtactgctctccatgatcaatt 489  Q
    ||||||||||||||| |||||||||||||||||||||||||    ||| |||||||||||||||||||||||||||||||||||    
T  52986600 tataagctatacctg-tcccgaacatcatcatgaggtgaac----tagcttgacaaacattggtactgctctccatgatcaatt 52986678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 47789380 - 47789438
Alignment:
Q  175 tttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    |||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||    
T  47789380 tttgtagtgtttggtaaaattagcggttgaagttgcttctaaatacgaaatgacctaaa 47789438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 286 - 379
Target Start/End: Original strand, 24418246 - 24418339
Alignment:
Q  286 taagctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataaactcgtgtaaaaatgacaattatcaaaca 379  Q
    |||||||||| ||||||||| ||||||||||||||| | ||||| |||| ||||  ||| ||||| || |||||||||||||||||| ||||||    
T  24418246 taagctataagctacttgaattagcttatcaaaaaccgctataagctcaagaaaataagatataagcttgtgtaaaaatgacaattagcaaaca 24418339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 286 - 416
Target Start/End: Complemental strand, 52831524 - 52831390
Alignment:
Q  286 taagctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataaactcgtgtaaaaatgacaattatcaaacaaatctt 385  Q
    |||||||||| ||||||||| |||||||||||||||  |||||| |||||||||  ||| || || ||||||||||||||||  ||| ||||||| | ||    
T  52831524 taagctataagctacttgaattagcttatcaaaaacctttataagctcatgaaaataagctacaagctcgtgtaaaaatgaccgttaccaaacaagtttt 52831425  T
Q  386 ttataatcaca----cttataagctataagctata 416  Q
    || |||||| |    |||||||||||||| |||||    
T  52831424 ttttaatcatatgagcttataagctataaactata 52831390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 381
Target Start/End: Original strand, 2733406 - 2733488
Alignment:
Q  298 tacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataaactcgtgtaaaaatgacaattatcaaacaaa 381  Q
    |||||||| ||||||||||||||||| | ||| ||||| |||  ||||||||| || |||||||||||||||||| ||||||||    
T  2733406 tacttgaattagcttatcaaaaactgat-taagctcattaaaataagttataagctggtgtaaaaatgacaattaccaaacaaa 2733488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 394
Target Start/End: Original strand, 17425650 - 17425793
Alignment:
Q  251 taaaatggagataaaaagtgatatgctataagcgttaagctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataa 350  Q
    |||||| |||||||||||||||| | ||||||| ||||||||||  ||||||||  |||||||| || ||| | ||||| |||| ||||  | | |||||    
T  17425650 taaaattgagataaaaagtgataggttataagctttaagctataggctacttgagttagcttattaataaccgctataagctcaagaaaatacgctataa 17425749  T
Q  351 actcgtgtaaaaatgacaattatcaaacaaatcttttataatca 394  Q
     ||||||| |||||| || ||| ||||||| | |||| ||||||    
T  17425750 gctcgtgttaaaatggcagttaccaaacaagtattttttaatca 17425793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 17425588 - 17425640
Alignment:
Q  176 ttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 228  Q
    ||||||||| |||||||||||| |||||||||| ||| |||||||||||||||    
T  17425588 ttgtagtgtttggtaaaattagtggttgaagtaacttataaatatgaaatgac 17425640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 31736149 - 31736213
Alignment:
Q  286 taagctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataa 350  Q
    |||||||||||||||||||| |||||||| |||||  ||||||| |||||||||  |||||||||    
T  31736149 taagctataaactacttgaattagcttataaaaaatcgttataagctcatgaaaataagttataa 31736213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 52327495 - 52327445
Alignment:
Q  173 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaa 223  Q
    |||||||||||| ||||||||||||| |||||| |||||| ||||||||||    
T  52327495 aatttgtagtgtttggtaaaattagcagttgaactagcttataaatatgaa 52327445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 39276577 - 39276512
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    |||| |||||||||||| |||||||||||| ||||||| |||||| ||||| | ||||||| ||||    
T  39276577 gattgaatttgtagtgtttggtaaaattagtggttgaactagcttataaatcttaaatgacataaa 39276512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 297 - 354
Target Start/End: Original strand, 50570375 - 50570432
Alignment:
Q  297 ctacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataaactc 354  Q
    ||||||||| |||||||||||||| ||||||||||| || |||  |||||||||||||    
T  50570375 ctacttgaagtagcttatcaaaaaatgttataatctaataaaaataagttataaactc 50570432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 52831651 - 52831573
Alignment:
Q  173 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaattaaatgtgtatttaattaa 253  Q
    ||||||||| ||  |||||||| |||| |||||||||||| ||||||||||||| | ||||  ||||||| ||||||||||    
T  52831651 aatttgtagagttcggtaaaatcagcgattgaagtagcttataaatatgaaatggcataaa--aaatgtgcatttaattaa 52831573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 41173979 - 41173919
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 228  Q
    |||| |||||||| ||| ||||||||||| || ||||| |||||| |||||||||||||||    
T  41173979 gattgaatttgtattgtttggtaaaattatcgattgaactagcttgtaaatatgaaatgac 41173919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 44555585 - 44555641
Alignment:
Q  177 tgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    |||||||| ||||||||||||||||| || || ||| ||||||||||||||| ||||    
T  44555585 tgtagtgtttggtaaaattagcggttaaactaccttataaatatgaaatgacataaa 44555641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 21501831 - 21501772
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatga 227  Q
    ||||||||| ||||||| ||||| ||||||||||| || |||||| ||| ||||||||||    
T  21501831 gattaaattcgtagtgtttggtagaattagcggttaaactagcttataagtatgaaatga 21501772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 378
Target Start/End: Complemental strand, 39276423 - 39276332
Alignment:
Q  287 aagctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataaactcgtgtaaaaatgacaattatcaaac 378  Q
    ||||| ||| ||||||||| ||||||||||||||  ||||||| ||  | |||  ||||||||| ||||||  ||||||||| |||||||||    
T  39276423 aagctttaagctacttgaattagcttatcaaaaaacgttataagctagtaaaaataagttataagctcgtgagaaaatgacagttatcaaac 39276332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 3535360 - 3535298
Alignment:
Q  171 taaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    |||||||||||||| ||||||| ||| | |||||| || ||| ||||||||||||||| ||||    
T  3535360 taaatttgtagtgtttggtaaatttaccagttgaattaacttataaatatgaaatgacataaa 3535298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 20530490 - 20530543
Alignment:
Q  180 agtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    ||||| ||||||||||||||||||||||  ||  ||||||| ||||||||||||    
T  20530490 agtgtttggtaaaattagcggttgaagtgactaataaatataaaatgacctaaa 20530543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 34812677 - 34812742
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    |||| |||||| ||||| | |||||||| | ||||||| |||||| ||||||||||||||| ||||    
T  34812677 gattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaa 34812742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 24418116 - 24418175
Alignment:
Q  173 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    |||||||||||| ||||||| ||||  ||| ||||||||| ||||||||||||||| ||||    
T  24418116 aatttgtagtgtttggtaaa-ttagttgttcaagtagcttataaatatgaaatgacataaa 24418175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 30802486 - 30802427
Alignment:
Q  173 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    |||||||||||| ||||||||||| || ||||| || ||| ||||||||||||||| ||||    
T  30802486 aatttgtagtgtttggtaaaatta-cgattgaattaacttataaatatgaaatgacataaa 30802427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 364
Target Start/End: Original strand, 55723237 - 55723309
Alignment:
Q  292 ataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataaactcgtgtaaaaat 364  Q
    |||||||||||||| |||||||||| | || | ||||||||||| |||| ||| | ||| |||||| ||||||    
T  55723237 ataaactacttgaattagcttatcacataccgctataatctcataaaattaagctttaagctcgtgaaaaaat 55723309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 251 - 413
Target Start/End: Complemental strand, 43822625 - 43822474
Alignment:
Q  251 taaaatggagataaaaagtgatatgctataagcgttaagctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataa 350  Q
    ||||||||||||||||||||| | ||||||||| ||||||||       |||||| |||||||||||||||   |||||||||||||||  ||| |||||    
T  43822625 taaaatggagataaaaagtgacaagctataagctttaagcta-------cttgaattagcttatcaaaaaccactataatctcatgaaaataagctataa 43822533  T
Q  351 actcgtgtaaaaatgacaattatcaaacaaatcttttataatcacacttataagctataagct 413  Q
     || |||||||||||||||||| |||||  ||||||| ||||||    |||||||||||||||    
T  43822532 gcttgtgtaaaaatgacaattaccaaacggatcttttttaatca----tataagctataagct 43822474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 32582658 - 32582594
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    |||| |||||||||||| ||||||||||||| | ||||||||||| ||| ||||||||||| ||||    
T  32582658 gattgaatttgtagtgtttggtaaaattagccg-tgaagtagcttataagtatgaaatgacataaa 32582594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 263 - 320
Target Start/End: Original strand, 38684749 - 38684806
Alignment:
Q  263 aaaaagtgatatgctataagcgttaagctataaactacttgaactagcttatcaaaaa 320  Q
    ||||| ||||| | ||||||| ||||||||||| ||||||||| ||||||||||||||    
T  38684749 aaaaaatgataagttataagctttaagctataagctacttgaattagcttatcaaaaa 38684806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 20873072 - 20873132
Alignment:
Q  173 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    ||||| |||||| ||||||||| ||||||||||||| ||| || |||||||||||| ||||    
T  20873072 aatttttagtgtttggtaaaatcagcggttgaagtaacttatacatatgaaatgacataaa 20873132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 397
Target Start/End: Complemental strand, 32645755 - 32645704
Alignment:
Q  346 tataaactcgtgtaaaaatgacaattatcaaacaaatcttttataatcacac 397  Q
    ||||| |||||||||||||||||||||  |||||| |||||| |||||||||    
T  32645755 tataagctcgtgtaaaaatgacaattactaaacaactcttttttaatcacac 32645704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 378
Target Start/End: Complemental strand, 37334563 - 37334472
Alignment:
Q  287 aagctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataaactcgtgtaaaaatgacaattatcaaac 378  Q
    ||||||||| |||| |||  |||||||| | ||||  |||||| |||||||||    | ||||||||||||||||||||||| |||||||||    
T  37334563 aagctataagctacgtgagttagcttataataaaccattataagctcatgaaaatctgctataaactcgtgtaaaaatgacagttatcaaac 37334472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 329
Target Start/End: Complemental strand, 30915 - 30837
Alignment:
Q  251 taaaatggagataaaaagtgatatgctataagcgttaagctataaactacttgaactagcttatcaaaaactgttataa 329  Q
    |||||| |||||||| | |||||  |||||| | ||||  ||||||||||||||| ||  |||||||||||||||||||    
T  30915 taaaattgagataaataatgataaactataaactttaatttataaactacttgaattaatttatcaaaaactgttataa 30837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 304
Target Start/End: Complemental strand, 1384275 - 1384229
Alignment:
Q  258 gagataaaaagtgatatgctataagcgttaagctataaactacttga 304  Q
    |||||||||||||||| | ||||||| ||||||||||| ||||||||    
T  1384275 gagataaaaagtgataagttataagctttaagctataagctacttga 1384229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 3729926 - 3729869
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaat 225  Q
    |||| |||||||||||| |||||  ||||||||||||| | |||| ||||||||||||    
T  3729926 gattgaatttgtagtgtttggtatgattagcggttgaactggcttataaatatgaaat 3729869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 9198050 - 9198115
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    |||| ||| |||||||| ||||||||||||  |||||| ||| || ||||||||||||||| ||||    
T  9198050 gattgaatctgtagtgtttggtaaaattagttgttgaactagtttgtaaatatgaaatgacataaa 9198115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 118 - 233
Target Start/End: Complemental strand, 35058802 - 35058684
Alignment:
Q  118 ggatagctgataagctaacgtataacagacgacatataagctagcttatag---attaaatttgtagtgtatggtaaaattagcggttgaagtagcttct 214  Q
    ||||||||||||| | | | |||| |||| ||| ||||||||| |||| ||   |||||||||||||||| |||||||||||||||||||| || ||| |    
T  35058802 ggatagctgataaaccagcttatagcagatgacttataagctaacttaaagctgattaaatttgtagtgtttggtaaaattagcggttgaactaccttat 35058703  T
Q  215 aaatatgaaatgacctaaa 233  Q
    |||||||||||||| ||||    
T  35058702 aaatatgaaatgacataaa 35058684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 251 - 321
Target Start/End: Original strand, 20791937 - 20792007
Alignment:
Q  251 taaaatggagataaaaagtgatatgctataagcgttaagctataaactacttgaactagcttatcaaaaac 321  Q
    ||||||||| ||||||||||| | | ||||||  ||||||||||| ||||||||| |||||||||||||||    
T  20791937 taaaatggaaataaaaagtgacaagttataagatttaagctataagctacttgaattagcttatcaaaaac 20792007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 1714041 - 1714106
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    |||| |||||||||||| ||||||||||| | |||||||||| || ||||||||||||||| ||||    
T  1714041 gattgaatttgtagtgtttggtaaaattaaccgttgaagtagtttataaatatgaaatgacataaa 1714106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 416
Target Start/End: Complemental strand, 7274715 - 7274581
Alignment:
Q  286 taagctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataaactcgtgtaaaaatgacaattatcaaacaaatctt 385  Q
    |||||||||||||||||||| |||||||||| |  |   ||| | |||||||||  ||||||||| ||||| ||||||||| | |||| |||||| ||||    
T  7274715 taagctataaactacttgaattagcttatcagaggccactatgagctcatgaaaataagttataagctcgtttaaaaatgatagttatgaaacaagtctt 7274616  T
Q  386 ttataatcacac----ttataagctataagctata 416  Q
    || |||||| ||    ||||||||||| |||||||    
T  7274615 ttttaatcatacgagcttataagctatgagctata 7274581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 320
Target Start/End: Complemental strand, 42747711 - 42747642
Alignment:
Q  251 taaaatggagataaaaagtgatatgctataagcgttaagctataaactacttgaactagcttatcaaaaa 320  Q
    |||||| |||||||||||||||| ||||||||| ||||| |||||  |||||||| |||||||| |||||    
T  42747711 taaaattgagataaaaagtgataagctataagctttaagttataagttacttgaattagcttataaaaaa 42747642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 329
Target Start/End: Complemental strand, 10518320 - 10518256
Alignment:
Q  265 aaagtgatatgctataagcgttaagctataaactacttgaactagcttatcaaaaactgttataa 329  Q
    ||||||||| | ||||||| ||||||||||| |||||| || |||||||||||||| ||||||||    
T  10518320 aaagtgataagttataagctttaagctataagctacttaaattagcttatcaaaaaatgttataa 10518256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 21516511 - 21516571
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 228  Q
    |||| ||||||| |||| |||||||||||| ||||||| |||||| |||||||||||||||    
T  21516511 gattgaatttgttgtgtttggtaaaattagtggttgaaatagcttttaaatatgaaatgac 21516571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 30173406 - 30173466
Alignment:
Q  173 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    |||||||| ||| || ||||||||||||||||||||| || ||||||||||||||| ||||    
T  30173406 aatttgtaatgtttgttaaaattagcggttgaagtagtttataaatatgaaatgacataaa 30173466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 32348470 - 32348410
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 228  Q
    |||| |||||||||||| |||||||||||||||||||  |||||| ||||| |||||||||    
T  32348470 gattgaatttgtagtgtttggtaaaattagcggttgagctagcttataaatttgaaatgac 32348410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 394
Target Start/End: Complemental strand, 32602868 - 32602760
Alignment:
Q  286 taagctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataaactcgtgtaaaaatgacaattatcaaacaaatctt 385  Q
    |||||||||| ||| ||||| |||||||||||| ||  |||||| | |||||||  ||  ||||| ||||||||||| ||| | ||| ||||||||||||    
T  32602868 taagctataagctatttgaattagcttatcaaatacctttataaacacatgaaaataaactataagctcgtgtaaaactgatagttagcaaacaaatctt 32602769  T
Q  386 ttataatca 394  Q
    || ||||||    
T  32602768 ttttaatca 32602760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 3161053 - 3160982
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaattaaat 239  Q
    |||| |||||||||||| ||||||||||| || ||||| |||| | ||||||||||||||| |||| |||||    
T  3161053 gattgaatttgtagtgtttggtaaaattaacgtttgaactagcatataaatatgaaatgacataaaataaat 3160982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 32603004 - 32602949
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaa 223  Q
    |||| |||||||||||| | |||||||||| |||||||||||||| ||||||||||    
T  32603004 gattgaatttgtagtgtttagtaaaattagtggttgaagtagcttataaatatgaa 32602949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 3949640 - 3949705
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    |||| |||||||||||| |||||||||||||| ||||| ||  || ||||||||||||||| ||||    
T  3949640 gattgaatttgtagtgtttggtaaaattagcgtttgaactaatttataaatatgaaatgacataaa 3949705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 379
Target Start/End: Original strand, 21516625 - 21516754
Alignment:
Q  251 taaaatggagataaaaagtgatat-gctataagcgttaagctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttata 349  Q
    |||||| ||||||| |||||| |  ||||||| | |||||||||||  |||||||  | |||||  |||||  | ||||| ||||| |||| ||||||||    
T  21516625 taaaattgagataagaagtgacaaagctataaactttaagctataagatacttgattttgcttaataaaaaacgctataagctcatcaaattaagttata 21516724  T
Q  350 aactcgtgtaaaaatgacaattatcaaaca 379  Q
    | |||||| |||||||||||||| ||||||    
T  21516725 agctcgtgaaaaaatgacaattaccaaaca 21516754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 23908830 - 23908890
Alignment:
Q  173 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    |||||||| ||| |||| ||||||| ||||||| |||||| ||||||||||||||| ||||    
T  23908830 aatttgtaatgtttggtgaaattagtggttgaactagcttataaatatgaaatgacataaa 23908890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 31117601 - 31117661
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 228  Q
    |||| |||||||||||| || ||||||||||| ||||| |||| | |||||||||||||||    
T  31117601 gattgaatttgtagtgtttgataaaattagcgattgaaatagcatataaatatgaaatgac 31117661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 20791823 - 20791874
Alignment:
Q  173 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaa 224  Q
    |||||||||||| |||||||||| ||| |||||||||||| ||||| |||||    
T  20791823 aatttgtagtgtttggtaaaattggcgattgaagtagcttataaatgtgaaa 20791874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 31795359 - 31795410
Alignment:
Q  173 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaa 224  Q
    |||||||||||| |||||||| || |||||||| |||||| |||||||||||    
T  31795359 aatttgtagtgtttggtaaaactaacggttgaactagcttataaatatgaaa 31795410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 339
Target Start/End: Original strand, 46315642 - 46315693
Alignment:
Q  288 agctataaactacttgaactagcttatcaaaaactgttataatctcatgaaa 339  Q
    |||||||| ||||||||| ||||||||||||||  ||||||| |||||||||    
T  46315642 agctataagctacttgaaatagcttatcaaaaaacgttataagctcatgaaa 46315693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 368
Target Start/End: Complemental strand, 32359239 - 32359169
Alignment:
Q  298 tacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataaactcgtgtaaaaatgaca 368  Q
    |||||||| ||||||||||||||  | | ||| |||||||||  ||| ||||| |||||||||||||||||    
T  32359239 tacttgaattagcttatcaaaaatcgctgtaagctcatgaaaataagctataagctcgtgtaaaaatgaca 32359169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 387
Target Start/End: Complemental strand, 9496816 - 9496771
Alignment:
Q  342 aagttataaactcgtgtaaaaatgacaattatcaaacaaatctttt 387  Q
    ||||||||| |||||| |||||||||||||| |||||| |||||||    
T  9496816 aagttataagctcgtgaaaaaatgacaattaccaaacatatctttt 9496771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 379
Target Start/End: Original strand, 31117739 - 31117831
Alignment:
Q  289 gctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttata--aactcgtgtaaaaatgacaattatcaaaca 379  Q
    ||||||| ||||||||| || |||||||||||  | ||||| ||||| |||| ||||||||  |||| |||  ||||||||||||| ||||||    
T  31117739 gctataagctacttgaattatcttatcaaaaaaagctataagctcataaaattaagttatattaacttgtgagaaaatgacaattaccaaaca 31117831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 32359383 - 32359334
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaa 217  Q
    |||| |||||||| ||| |||||||||||||| |||||||||||| ||||    
T  32359383 gattgaatttgtaatgtttggtaaaattagcgtttgaagtagcttataaa 32359334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 339
Target Start/End: Original strand, 37131512 - 37131565
Alignment:
Q  286 taagctataaactacttgaactagcttatcaaaaactgttataatctcatgaaa 339  Q
    |||||||||| ||||||||| ||||||||||||| ||||| |||  ||||||||    
T  37131512 taagctataagctacttgaattagcttatcaaaagctgttgtaagttcatgaaa 37131565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 35926534 - 35926582
Alignment:
Q  180 agtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 228  Q
    ||||| |||||||||||| ||||||| |||||| ||| |||||||||||    
T  35926534 agtgtttggtaaaattagtggttgaactagcttataagtatgaaatgac 35926582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 166803 - 166743
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 228  Q
    |||| |||||||||||| |||||||||||||||||||| |||||| |||||||||||||||    
T  166803 gattgaatttgtagtgtttggtaaaattagcggttgaactagcttataaatatgaaatgac 166743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 2111079 - 2111014
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    |||| |||||| ||||| |||||||||||||||||||| |||||| ||||||||||||||| ||||    
T  2111079 gattgaatttgcagtgtttggtaaaattagcggttgaactagcttataaatatgaaatgacataaa 2111014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 8407639 - 8407586
Alignment:
Q  180 agtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    ||||| |||||||||||||||||||| |||||| ||||||||||||||| ||||    
T  8407639 agtgtttggtaaaattagcggttgaactagcttataaatatgaaatgacataaa 8407586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 35764789 - 35764724
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    |||| |||||| ||||| |||||||||||||||||||| ||| || ||||||||||||||| ||||    
T  35764789 gattgaatttgcagtgtttggtaaaattagcggttgaactagtttataaatatgaaatgacataaa 35764724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 43408738 - 43408678
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 228  Q
    |||| |||||||||||| ||||||||||||   ||||| |||||| |||||||||||||||    
T  43408738 gattgaatttgtagtgtttggtaaaattagtaattgaactagcttataaatatgaaatgac 43408678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 3346113 - 3346184
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaattaaat 239  Q
    |||| |||||||| |||||| |||||||| |||||| | || ||| |||||||||||||| ||||| |||||    
T  3346113 gattgaatttgtaatgtatgataaaattaacggttggaataacttataaatatgaaatgatctaaaataaat 3346184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 5111518 - 5111572
Alignment:
Q  174 atttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 228  Q
    ||||||||||| ||||||||| |||| ||||| |||||| | |||||||||||||    
T  5111518 atttgtagtgtttggtaaaataagcgcttgaactagcttattaatatgaaatgac 5111572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 253
Target Start/End: Original strand, 6078472 - 6078556
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaattaaatgtgtatttaattaa 253  Q
    |||| |||||||||| | || |||||||| |||| |||||| ||| ||||||||||| ||| |||| | ||| |||||||||||||    
T  6078472 gattgaatttgtagtttttgataaaattaacggtggaagtaacttataaatatgaaaagacataaaat-aatatgtatttaattaa 6078556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 253
Target Start/End: Original strand, 6082404 - 6082488
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaattaaatgtgtatttaattaa 253  Q
    |||| |||||||||| | || |||||||| |||| |||||| ||| ||||||||||| ||| |||| | ||| |||||||||||||    
T  6082404 gattgaatttgtagtttttgataaaattaacggtggaagtaacttataaatatgaaaagacataaaat-aatatgtatttaattaa 6082488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 12524607 - 12524656
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaa 217  Q
    |||| |||||||||||| ||||||||||||| ||||||||| ||| ||||    
T  12524607 gattgaatttgtagtgtttggtaaaattagccgttgaagtaacttataaa 12524656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 28947321 - 28947386
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    |||| |||||| ||||| | |||||||| | ||||||| |||||| ||||||||||||||| ||||    
T  28947321 gattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaa 28947386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 926046 - 925986
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 228  Q
    |||| ||||||| |||| ||||||||| || |||||||  ||||| |||||||||||||||    
T  926046 gattgaatttgttgtgtttggtaaaatgagtggttgaaccagcttataaatatgaaatgac 925986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 21367097 - 21367133
Alignment:
Q  174 atttgtagtgtatggtaaaattagcggttgaagtagc 210  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  21367097 atttgtagtgtttggtaaaattagcgattgaagtagc 21367133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 25019505 - 25019565
Alignment:
Q  173 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    |||| ||||||| ||||||||||||||||| ||||  ||| ||| ||||||||||| ||||    
T  25019505 aattcgtagtgtttggtaaaattagcggttaaagtcacttgtaattatgaaatgacataaa 25019565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 25099576 - 25099628
Alignment:
Q  181 gtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    |||| ||||||||||||| ||||||||||||  ||||||| ||||||| ||||    
T  25099576 gtgtttggtaaaattagctgttgaagtagctgataaatataaaatgacataaa 25099628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 37740812 - 37740756
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaa 224  Q
    |||| |||||||||||| || || ||||||| |||||| |||||| |||||||||||    
T  37740812 gattgaatttgtagtgtttgatacaattagctgttgaactagcttttaaatatgaaa 37740756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 377
Target Start/End: Complemental strand, 883806 - 883719
Alignment:
Q  290 ctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataaactcgtgtaaaaatgacaattatcaaa 377  Q
    |||||||||||||||| || ||||||| |||||  ||||  |||||||||  ||||||||| |||||||||||||| || ||||||||    
T  883806 ctataaactacttgaattaacttatcagaaacttctatatgctcatgaaaataagttataagctcgtgtaaaaatgtcagttatcaaa 883719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 377
Target Start/End: Complemental strand, 1243135 - 1243048
Alignment:
Q  290 ctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataaactcgtgtaaaaatgacaattatcaaa 377  Q
    |||||||||||||||| || ||||||| |||||  ||||  |||||||||  ||||||||| |||||||||||||| || ||||||||    
T  1243135 ctataaactacttgaattaacttatcagaaacttctatatgctcatgaaaataagttataagctcgtgtaaaaatgtcagttatcaaa 1243048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 3837143 - 3837088
Alignment:
Q  173 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 228  Q
    |||||||||||| ||||||||||||| ||||||||||||| |||||||| ||||||    
T  3837143 aatttgtagtgtttggtaaaattagccgttgaagtagcttataaatatgtaatgac 3837088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 28175451 - 28175528
Alignment:
Q  173 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaattaaatgtgtatttaatt 251  Q
    |||||||||||| || || |||||||||||||||||||||  |||||||||||||| ||||  |||||| |||||||||    
T  28175451 aatttgtagtgtttgatataattagcggttgaagtagcttacaaatatgaaatgacataaa-aaaatgtatatttaatt 28175528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 883925 - 883864
Alignment:
Q  189 taaaattagcggttgaagtagcttctaaatatgaaatgacctaaattaaatgtgtatttaatta 252  Q
    |||||||| ||||||||||||||| ||||||||||||||| ||||  ||||||| |||||||||    
T  883925 taaaattaacggttgaagtagcttataaatatgaaatgacataaa--aaatgtgcatttaatta 883864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 1243254 - 1243193
Alignment:
Q  189 taaaattagcggttgaagtagcttctaaatatgaaatgacctaaattaaatgtgtatttaatta 252  Q
    |||||||| ||||||||||||||| ||||||||||||||| ||||  ||||||| |||||||||    
T  1243254 taaaattaacggttgaagtagcttataaatatgaaatgacataaa--aaatgtgcatttaatta 1243193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 87160 - 87218
Alignment:
Q  175 tttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    |||||||||| | |||||||||||||||||| ||| || ||||||||||||||| ||||    
T  87160 tttgtagtgttttgtaaaattagcggttgaattagattgtaaatatgaaatgacataaa 87218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 44235370 - 44235415
Alignment:
Q  188 gtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    |||||||||||||||||||||| || ||||||||||||||| ||||    
T  44235370 gtaaaattagcggttgaagtagtttataaatatgaaatgacataaa 44235415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 13438325 - 13438389
Alignment:
Q  169 attaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    |||||||||||||||| |||| |||||||||||| || || ||| ||||||| ||||||| ||||    
T  13438325 attaaatttgtagtgtttggttaaattagcggttaaactaacttataaatataaaatgacataaa 13438389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 19683451 - 19683511
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 228  Q
    |||| |||||||||||| || ||||| |||||||||||||| ||  |||||||||||||||    
T  19683451 gattgaatttgtagtgtttgataaaaatagcggttgaagtaactaataaatatgaaatgac 19683511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 12473109 - 12473163
Alignment:
Q  251 taaaatggagataaaaagtgatatgctataagcgttaagctataaactacttgaa 305  Q
    |||||| |||||||||| ||||| |||| |||| ||||||||||| |||||||||    
T  12473109 taaaattgagataaaaaatgataagctacaagctttaagctataagctacttgaa 12473163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 2525353 - 2525296
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaat 225  Q
    |||| |||||||| ||| ||||||||||||| | |||| |||||| ||||||||||||    
T  2525353 gattgaatttgtattgtttggtaaaattagcagctgaactagcttataaatatgaaat 2525296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 44235317 - 44235370
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatg 221  Q
    |||| |||||||||||| ||||||| ||| | ||||||||||||| ||||||||    
T  44235317 gatttaatttgtagtgtttggtaaagttaaccgttgaagtagcttataaatatg 44235370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 44571499 - 44571446
Alignment:
Q  180 agtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    ||||| ||||||||||||| ||||||||||||  ||||||| ||||||| ||||    
T  44571499 agtgtttggtaaaattagctgttgaagtagctgataaatataaaatgacgtaaa 44571446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 253
Target Start/End: Original strand, 28543533 - 28543614
Alignment:
Q  170 ttaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaattaaatgtgtatttaattaa 253  Q
    |||||||| || ||| |||||||||||| | ||||| ||| || |||||||||||| || ||||  |||| |||||||||||||    
T  28543533 ttaaatttatattgtttggtaaaattagtgattgaaatagtttataaatatgaaataacttaaa--aaatatgtatttaattaa 28543614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 15968023 - 15967968
Alignment:
Q  173 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 228  Q
    |||||||||||  |||||||||||||||||||| |||||| |||||||||||||||    
T  15968023 aatttgtagtgcttggtaaaattagcggttgaactagcttataaatatgaaatgac 15967968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 27679289 - 27679230
Alignment:
Q  174 atttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    |||| |||||| |||||||||||||||||||| |||||| ||||||||||||||| ||||    
T  27679289 atttatagtgtctggtaaaattagcggttgaactagcttataaatatgaaatgacataaa 27679230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 31063014 - 31062936
Alignment:
Q  285 ttaagctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataaactcgtgtaaaaa 363  Q
    ||||||||||| ||||||||| ||||||||||||||| | ||||| ||| |||||  ||||||||| ||||| ||||||    
T  31063014 ttaagctataagctacttgaaatagcttatcaaaaaccgctataagctcttgaaaataagttataagctcgtataaaaa 31062936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 42139584 - 42139530
Alignment:
Q  173 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatga 227  Q
    |||||||||||| ||||||||||||| |||||| |||||| ||||||||||||||    
T  42139584 aatttgtagtgtttggtaaaattagcagttgaactagcttataaatatgaaatga 42139530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 350
Target Start/End: Complemental strand, 40909978 - 40909918
Alignment:
Q  290 ctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataa 350  Q
    |||||||||||||||| ||||||||||||||  ||||||| |||||||||  |||||||||    
T  40909978 ctataaactacttgaattagcttatcaaaaaacgttataagctcatgaaaataagttataa 40909918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 31063164 - 31063103
Alignment:
Q  167 agattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 228  Q
    ||||| |||||||||||| || ||| ||||||||||||||||  || |||||||||||||||    
T  31063164 agattgaatttgtagtgtttgataagattagcggttgaagtaatttataaatatgaaatgac 31063103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 21721979 - 21721919
Alignment:
Q  173 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    ||||||||| || ||||||||||||| |||||| |||||| ||||||| ||||||| ||||    
T  21721979 aatttgtagagtttggtaaaattagcagttgaaatagcttataaatataaaatgacataaa 21721919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 27863934 - 27863874
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 228  Q
    |||| |||||||||||| || |||||||| ||||||| ||||||| ||||| |||||||||    
T  27863934 gattgaatttgtagtgtttgataaaattaccggttgaggtagcttataaatgtgaaatgac 27863874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 394
Target Start/End: Complemental strand, 38356826 - 38356778
Alignment:
Q  346 tataaactcgtgtaaaaatgacaattatcaaacaaatcttttataatca 394  Q
    |||||||| |||| |||| ||||||||||||||||||||||| ||||||    
T  38356826 tataaacttgtgtgaaaaagacaattatcaaacaaatcttttttaatca 38356778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 44984222 - 44984285
Alignment:
Q  189 taaaattagcggttgaagtagcttctaaatatgaaatgacctaaattaaatgtgtatttaattaa 253  Q
    |||||||||||||| ||||| ||| ||||||||||||||| ||||  ||||||| ||||||||||    
T  44984222 taaaattagcggttaaagtaccttataaatatgaaatgacataaa-aaaatgtgcatttaattaa 44984285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 30804384 - 30804439
Alignment:
Q  173 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 228  Q
    |||||||||||| | |||||||||||||||||| ||| || ||| |||||||||||    
T  30804384 aatttgtagtgtttcgtaaaattagcggttgaactagattataagtatgaaatgac 30804439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 40910097 - 40910036
Alignment:
Q  189 taaaattagcggttgaagtagcttctaaatatgaaatgacctaaattaaatgtgtatttaatt 251  Q
    |||||||||||||| ||||| ||| ||||||||||||||| ||||  ||||||| ||||||||    
T  40910097 taaaattagcggttaaagtaccttataaatatgaaatgacataaa-aaaatgtgcatttaatt 40910036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 28249824 - 28249889
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    ||||||||||||||||| | |||||||||  ||||||  || ||| ||||||||||||||| ||||    
T  28249824 gattaaatttgtagtgtgtagtaaaattaatggttgatctaacttataaatatgaaatgacataaa 28249889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 350
Target Start/End: Original strand, 44984345 - 44984405
Alignment:
Q  290 ctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataa 350  Q
    |||||| ||||||||| ||||||||||||||  ||||||| ||| |||||  |||||||||    
T  44984345 ctataagctacttgaattagcttatcaaaaaacgttataagctcgtgaaaataagttataa 44984405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 1621438 - 1621484
Alignment:
Q  187 ggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||    
T  1621438 ggtaaaattagcggttgaagtagcttataaatatgaaatgacataaa 1621484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 251 - 321
Target Start/End: Original strand, 6462367 - 6462437
Alignment:
Q  251 taaaatggagataaaaagtgatatgctataagcgttaagctataaactacttgaactagcttatcaaaaac 321  Q
    |||||| |||||||| | ||||| ||||||||| ||||| ||||| ||||||||| |||||||||||||||    
T  6462367 taaaattgagataaataatgataagctataagctttaagatataagctacttgaattagcttatcaaaaac 6462437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 288 - 362
Target Start/End: Complemental strand, 9004888 - 9004814
Alignment:
Q  288 agctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataaactcgtgtaaaa 362  Q
    |||||||| ||||||||| ||||||||||||||| | ||||| |||||||||  ||| ||||| |||||||||||    
T  9004888 agctataagctacttgaattagcttatcaaaaaccgatataagctcatgaaaataagctataagctcgtgtaaaa 9004814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 32046975 - 32046916
Alignment:
Q  167 agattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatg 226  Q
    ||||| |||||| ||||| |||||| ||||||||||||| |||||| |||||||||||||    
T  32046975 agattgaatttggagtgtttggtaatattagcggttgaactagcttttaaatatgaaatg 32046916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 13838853 - 13838914
Alignment:
Q  260 gataaaaagtgatatgctataagcgttaagctataaactacttgaactagcttatcaaaaac 321  Q
    |||||||| ||||| ||||||||  ||||||||||| ||||||||| ||||| |||||||||    
T  13838853 gataaaaaatgataagctataagttttaagctataagctacttgaattagctaatcaaaaac 13838914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 17902852 - 17902799
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatg 221  Q
    ||||||||||||||||| |||||||| |||| |||||| |||||| ||||||||    
T  17902852 gattaaatttgtagtgtttggtaaaactagcagttgaactagcttataaatatg 17902799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 28363604 - 28363538
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaat 234  Q
    |||| |||||||||||| |||||| |||||| |||||| ||| || ||| ||||||||||| |||||    
T  28363604 gattgaatttgtagtgtttggtaatattagctgttgaactagtttataagtatgaaatgacataaat 28363538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 17259651 - 17259606
Alignment:
Q  188 gtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    |||||||||||||||||| |||||| ||| ||||||||||| ||||    
T  17259651 gtaaaattagcggttgaactagcttataagtatgaaatgacataaa 17259606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 41892772 - 41892829
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaat 225  Q
    |||| |||||||||||| ||||| ||||| ||||| || |||||| ||||||||||||    
T  41892772 gattgaatttgtagtgtttggtataattaacggttaaactagcttataaatatgaaat 41892829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 2942128 - 2942068
Alignment:
Q  173 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    ||||||||| || |||||||||||| ||||||| || ||| ||||||| ||||||| ||||    
T  2942128 aatttgtagggtttggtaaaattagtggttgaactaacttataaatataaaatgacataaa 2942068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 5390490 - 5390446
Alignment:
Q  173 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaa 217  Q
    |||||||||||| |||| |||| |||||||||| |||||||||||    
T  5390490 aatttgtagtgtttggttaaatgagcggttgaactagcttctaaa 5390446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 31677346 - 31677298
Alignment:
Q  180 agtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 228  Q
    ||||| |||||||| ||||||||||| ||||||  ||||||||||||||    
T  31677346 agtgtttggtaaaactagcggttgaactagcttacaaatatgaaatgac 31677298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 34640238 - 34640178
Alignment:
Q  173 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    |||||||| ||| |||||||||||| ||||   ||||||| ||||||||||||||| ||||    
T  34640238 aatttgtaatgtttggtaaaattagtggttattgtagcttataaatatgaaatgacataaa 34640178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 234
Target Start/End: Original strand, 84828 - 84915
Alignment:
Q  143 cagacgacatataagctagcttatagattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaat 234  Q
    |||| ||| ||||||||||||||| ||||    ||||||| | || |||||||||| ||||||||||||| || |||||||||||| |||||    
T  84828 cagatgacttataagctagcttattgatt----ttgtagtatttgttaaaattagcagttgaagtagcttatagatatgaaatgacataaat 84915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 724763 - 724711
Alignment:
Q  173 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaat 225  Q
    |||||||||||| || ||||||||| |||||||||||||| ||||||| ||||    
T  724763 aatttgtagtgtttgataaaattagtggttgaagtagcttataaatataaaat 724711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 34544483 - 34544423
Alignment:
Q  173 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    |||||||||||| || || |||||| ||||||| |||||| ||||||||||||||| ||||    
T  34544483 aatttgtagtgtttgatacaattagtggttgaactagcttataaatatgaaatgacataaa 34544423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 9749812 - 9749867
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaa 223  Q
    |||| |||||||||||| |||||||||||| |||||||||||  | ||||||||||    
T  9749812 gatttaatttgtagtgtttggtaaaattagtggttgaagtagtgtataaatatgaa 9749867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 1288495 - 1288437
Alignment:
Q  175 tttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    |||||||||| || |||||||| |||||||| || ||| ||||||||||||||| ||||    
T  1288495 tttgtagtgtttgataaaattaacggttgaaataacttataaatatgaaatgacataaa 1288437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 253
Target Start/End: Complemental strand, 13692577 - 13692501
Alignment:
Q  176 ttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaattaaatgtgtatttaattaa 253  Q
    ||||||| | || ||||||||| ||||||||||| |  ||||||||||||||| ||||  |||||| |||||||||||    
T  13692577 ttgtagtatttgataaaattagtggttgaagtagttaataaatatgaaatgacataaa-gaaatgtatatttaattaa 13692501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 29052761 - 29052696
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 233  Q
    |||| |||||| ||||| ||||||||| ||||||| |  |||||| ||||||||||||||| ||||    
T  29052761 gattgaatttgcagtgtttggtaaaataagcggttcacctagcttataaatatgaaatgacataaa 29052696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 8014427 - 8014487
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 228  Q
    |||| ||||| |||||| ||||||||||||| || ||| |||||| |||| ||||||||||    
T  8014427 gattgaatttatagtgtttggtaaaattagcagtcgaactagcttataaacatgaaatgac 8014487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 338918 - 338977
Alignment:
Q  168 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatga 227  Q
    |||| |||||||||||| || || | ||||||||||||||||||| ||||||| ||||||    
T  338918 gattgaatttgtagtgtttgatatagttagcggttgaagtagcttataaatataaaatga 338977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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