View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1916_low_5 (Length: 497)
Name: NF1916_low_5
Description: NF1916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1916_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Original strand, 34525356 - 34525845
Alignment:
| Q |
1 |
taagcatatcataaattagcactacttgtataacaaaaggtatcatgatgtcaattggaaatcactcaggtctcatataattgcaagtaaacaaaactaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34525356 |
taagcatatcataaattagcactacttgtataacaaaaggtatcatgatgtcaattggaaatcactcaggtctcatataattgcaagtaaacaaaactaa |
34525455 |
T |
|
| Q |
101 |
ataaaacagaaatcgagaattttgaaaaccgggaaatggctccaactatggacccaagtaagtcaaagaaacacatattattattcaaacattggcgact |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34525456 |
ataaaacagaaatcgagaattttgaaaaccgggaaatggctccaactatggacccaagtaagtcaaagaaacacatattattattcaaacattggcgact |
34525555 |
T |
|
| Q |
201 |
tgaagttgcaaaacctcattcattagcaaaccatttttccaaaataacnnnnnnnccatgatggcctaacttaaactttggtattcactttcatgtgtgc |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34525556 |
tgaagttgcaaaacctcattcattagcaaaccatttttccaaaataactttttttccatgatggcctaacttaaactttggtattcactttcatgtgtgc |
34525655 |
T |
|
| Q |
301 |
atatttcagtgattttgtccaagtttacaatatttccagttaatgacaaatatacaaacagtgagagaagttaacacctttcccggataaaactttatgc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34525656 |
atatttcagtgattttgtccaagtttacaatatttccagttaatgacaaatatacaaacagtgagagaagttaacacctttcccggataaaactttatgc |
34525755 |
T |
|
| Q |
401 |
tgaaaccagatgcaaatccaactctatcctcaagccattggcgaatatatttctcctgctctgcaggagaatcaaatgtaatattcttcg |
490 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34525756 |
tgaaaccagatgcaaatccaactctatcctcaagccattggcgaatatatttctcctgctctgcaggagaatcaaatgtaatattgttcg |
34525845 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Original strand, 18004301 - 18004790
Alignment:
| Q |
1 |
taagcatatcataaattagcactacttgtataacaaaaggtatcatgatgtcaattggaaatcactcaggtctcatataattgcaagtaaacaaaactaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18004301 |
taagcatatcataaattagcactacttgtaaaacaaaaggtatcatgatgtcaattggaaatcactcaggtctcatataattgcaagtaaacaaaactaa |
18004400 |
T |
|
| Q |
101 |
ataaaacagaaatcgagaattttgaaaaccgggaaatggctccaactatggacccaagtaagtcaaagaaacacatattattattcaaacattggcgact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18004401 |
ataaaacagaaatcgagaattttgaaaaccgggaaatggctccaactatggacccaagtaagtcaaagaaacacatattattattcaaacattggcgact |
18004500 |
T |
|
| Q |
201 |
tgaagttgcaaaacctcattcattagcaaaccatttttccaaaataacnnnnnnnccatgatggcctaacttaaactttggtattcactttcatgtgtgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18004501 |
tgaagttgcaaaacctcattcattagcaaaccatttttccaaaataacttttttaccatgatggcctaacttaaactttggtattcactttcatgtgtgc |
18004600 |
T |
|
| Q |
301 |
atatttcagtgattttgtccaagtttacaatatttccagttaatgacaaatatacaaacagtgagagaagttaacacctttcccggataaaactttatgc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18004601 |
atatttcagtgattttgtccaagtttacaatatttccagttaatgacaaatatacaaacagtgagagaagttaacacctttcccggataaaactttatgc |
18004700 |
T |
|
| Q |
401 |
tgaaaccagatgcaaatccaactctatcctcaagccattggcgaatatatttctcctgctctgcaggagaatcaaatgtaatattcttcg |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
18004701 |
tgaaaccagatgcaaatccaactctatcctcaagccattggcgaatatatttctcctgctctgcaggagaatcaaatgtaatattgttcg |
18004790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 490
Target Start/End: Complemental strand, 28765021 - 28764527
Alignment:
| Q |
1 |
taagcatatcataaattagcactacttgtataacaaaaggtatcatgatgtcaattggaaatcactcaggtctcatataattgcaagtaaacaaaactaa |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||| || ||||||||||||||||| |||| |
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|
| T |
28765021 |
taagcatatcataa-ttagcactacttgtattccaaaaggtatcatgatgtcaagtggaaaacactcaggtctcgtaaaattgcaagtaaacaaa-ctaa |
28764924 |
T |
|
| Q |
101 |
ataaaacagaaatcgagaattttgaaaaccgggaaatggctccaactatggacccaagtaagtcaaagaaacacatattattattcaaacattggcgact |
200 |
Q |
| |
|
|||| |||||||| ||||||||||||||| || ||||||||| ||||||||||||||||| |||||||||| |||||||| |||||||||| |||| ||| |
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|
| T |
28764923 |
ataatacagaaatggagaattttgaaaactggtaaatggctcaaactatggacccaagtatgtcaaagaaaaacatattactattcaaacagtggcaact |
28764824 |
T |
|
| Q |
201 |
tgaagttgcaaaacctcattcattagcaaaccatttttccaaaataacnnnnnnnccatgatggcctaacttaaactttggtattcactttcatgtgtgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| |
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|
| T |
28764823 |
tgaagttgcaaaacctcattcattagcaaaccatttttccaaaataactttttttccatgatggccaaacttaaactttggtattcactttcatgtttgc |
28764724 |
T |
|
| Q |
301 |
atatttcagtgattt-------tgtccaagtttacaatatttccagttaatgacaaatatacaaacagtgagagaagttaacacctttcccggataaaac |
393 |
Q |
| |
|
||||||||||| ||| ||| || |||||||||||| | ||||||| |||| |||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
28764723 |
atatttcagtggttttgttttgtgtataactttacaatattttctgttaatggaaaatgtacaaacagtgagagaagttaaaacctttcccggataaaac |
28764624 |
T |
|
| Q |
394 |
tttatgctgaaaccagatgcaaatccaactctatcctcaagccattggcgaatatatttctcctgctctgcaggagaatcaaatgtaatattcttcg |
490 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
28764623 |
tttatgctgaaaccagatgcaaaaccaactctatcctcaagccattggcgaatatatttctcctgctctgcaggagaatcaaatgtaatattgttcg |
28764527 |
T |
|
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