View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1916_low_7 (Length: 476)
Name: NF1916_low_7
Description: NF1916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1916_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 20 - 411
Target Start/End: Complemental strand, 6236529 - 6236142
Alignment:
| Q |
20 |
ttatgggttctggccctctctagttttattgaatttcttcgcttgatcnnnnnnnnnnnnnnnttagattttcacctatcacctaggttttcaatttcta |
119 |
Q |
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| T |
6236529 |
ttatgggttctggccctcttcagttttattgaatttcttcgcttgat---aaaaaaaaaaaaattagattttcacctatcacctaggttttcaatttcta |
6236433 |
T |
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| Q |
120 |
ttaactaaagcgaaaggggaaatatggtttcgtagacttcttctacttttgttgaatgtgggaacactataatttagaaacaccatgatattattgcctt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
6236432 |
ttaactaaagcgaaaggggaaatatggtttcgtagacttcttctacttttgttgaatgtgggaacactaaaatttagaaacaccatgatat-attgcctt |
6236334 |
T |
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| Q |
220 |
gaccggtgaacaaacatcatgtcaaagaactagtactactactatatgcagtgagccctgtagatatggatgtgtttaccttttgtgttatttcttcttc |
319 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6236333 |
gaccagtgaacaaacatcatgtcaaagaactagtactactactatatgcagtgagccctgtagatatggatgtgtttaccttttgtgttatttcttgttc |
6236234 |
T |
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| Q |
320 |
atttcgttcttataaatcaaaaaacatagtgacattgattaggaaaataatctacgtagacacaaacacccattctacacccaagatataaa |
411 |
Q |
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| T |
6236233 |
atttcgttcttataaatcaaaaaacatagtgacattgattaggaaaataatctacgtagacacaaacacccattctacacccaagatataaa |
6236142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 281 - 371
Target Start/End: Complemental strand, 6240435 - 6240344
Alignment:
| Q |
281 |
agatatggatgtgtttaccttttgtgttatttcttcttcatttcgttct-tataaatcaaaaaacatagtgacattgattaggaaaataatc |
371 |
Q |
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| T |
6240435 |
agatatggatgtgtttaccttttgtgttatttcatgttcatttgtttgtatataaatcaaaaaacatagtgatgttgattaggaaaataatc |
6240344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 425 - 455
Target Start/End: Complemental strand, 6236124 - 6236094
Alignment:
| Q |
425 |
tagagaaagtgatatgataattgtgatacat |
455 |
Q |
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| T |
6236124 |
tagagaaagtgatatgataattgtgatacat |
6236094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 188
Target Start/End: Original strand, 33891807 - 33891908
Alignment:
| Q |
83 |
ttagattttcacctatcacctaggttttcaatttctattaactaaagcgaaaggggaaatatggtttcgtagacttcttctacttttgttgaatgtggga |
182 |
Q |
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||||||||||||| || | |||||||||||||| ||||||||| |||| ||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
33891807 |
ttagattttcacccataaactaggttttcaatta----taactaaagtgaaaagggaaatatggtttctaggacttcttttacttttgttgaatgtgggg |
33891902 |
T |
|
| Q |
183 |
acacta |
188 |
Q |
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|||||| |
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|
| T |
33891903 |
acacta |
33891908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 188
Target Start/End: Complemental strand, 33952441 - 33952340
Alignment:
| Q |
83 |
ttagattttcacctatcacctaggttttcaatttctattaactaaagcgaaaggggaaatatggtttcgtagacttcttctacttttgttgaatgtggga |
182 |
Q |
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||||||||||||| || | |||||||||||||| ||||||||| |||| ||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
33952441 |
ttagattttcacccataaactaggttttcaatta----taactaaagtgaaaagggaaatatggtttctaggacttcttttacttttgttgaatgtgggg |
33952346 |
T |
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| Q |
183 |
acacta |
188 |
Q |
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|||||| |
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| T |
33952345 |
acacta |
33952340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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