View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1916_low_8 (Length: 453)

Name: NF1916_low_8
Description: NF1916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1916_low_8
NF1916_low_8
[»] chr5 (8 HSPs)
chr5 (54-435)||(25614274-25614670)
chr5 (68-431)||(31262400-31262759)
chr5 (360-427)||(14308504-14308571)
chr5 (183-249)||(32429344-32429410)
chr5 (366-430)||(24005041-24005105)
chr5 (176-236)||(23940052-23940112)
chr5 (366-431)||(32429500-32429563)
chr5 (195-236)||(24004879-24004920)
[»] chr6 (9 HSPs)
chr6 (177-238)||(14438148-14438209)
chr6 (360-431)||(7818304-7818375)
chr6 (281-436)||(7860884-7861036)
chr6 (355-431)||(14435664-14435740)
chr6 (304-405)||(7815400-7815498)
chr6 (360-431)||(10416422-10416493)
chr6 (183-238)||(14435489-14435544)
chr6 (360-404)||(7872237-7872281)
chr6 (355-431)||(14438323-14438399)
[»] scaffold1089 (2 HSPs)
scaffold1089 (355-431)||(690-766)
scaffold1089 (183-234)||(521-572)
[»] chr1 (2 HSPs)
chr1 (355-431)||(37996661-37996737)
chr1 (304-421)||(28720077-28720191)
[»] chr4 (1 HSPs)
chr4 (360-431)||(14018628-14018699)
[»] chr7 (1 HSPs)
chr7 (362-431)||(19316676-19316745)


Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 54 - 435
Target Start/End: Complemental strand, 25614670 - 25614274
Alignment:
Q  54 ttatacttatcaattttactagacgactaaatgttctccaaaccatcaatctaattggttgcatataattagatgagaaactaattggaacacactgata 153  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25614670 ttatacttatcaattttactagacgattaaatgttctccaaaccatcaatctaattggttgcatataattagatgagaaactaattgaaacacactgata 25614571  T
Q  154 attctagtaagtactcctgggtaaatgatagtttacatcccggagaaatccttggacatgaggataactcttctataatttgactattttgcataagtaa 253  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25614570 actctagtaagtactcctgggtaaatgatagtttacatcccggagaaatccttggacatgaggataactcttctataatttgactattttgcataagtaa 25614471  T
Q  254 cccatttgagca---------------gcaagtactagctttgatttccatgtctcgtaagagcttcgcattctgcaaaatatatttagcaaatcctaga 338  Q
    ||||||||||||               ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25614470 cccatttgagcagcaatcatttgagcagcaagtagtagctttgatttccatgtctcgtaagagcttcgcattctgcaaaatatatttagcaaatcctaga 25614371  T
Q  339 tcactactgtcccagtcttctaagtttaaaatagtacatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattccatgg 435  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25614370 tcactactgtcccagtcttctaagtttaaaatagtacatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattccatgg 25614274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 68 - 431
Target Start/End: Complemental strand, 31262759 - 31262400
Alignment:
Q  68 tttactagacgactaaatgttctccaaaccatcaatctaattggttgcatataattagatgagaaactaattggaacacactgataattctagtaagtac 167  Q
    ||||||||| || ||||||||||||||||||||||  ||||||||||||||||||||||| | ||||||| || || || |||||||||||||||| ||     
T  31262759 tttactagaagagtaaatgttctccaaaccatcaaattaattggttgcatataattagattataaactaaatgaaaaacgctgataattctagtaacta- 31262661  T
Q  168 tcctgggtaaatgatagtttacatcccggagaaatccttggacatgaggataactcttctataatttgactattttgcataagtaacccatttgagcagc 267  Q
    | |||   |||| ||||| |||||| ||  |||||| || |||||||| |||| |||||| | ||| | |||||||| |||  |  ||   ||||| |||    
T  31262660 tactgttgaaataatagtctacatctcgttgaaatctttcgacatgagaataattcttctctgattggcctattttggatatatgtcctgcttgagaagc 31262561  T
Q  268 aagtactagctttgatttccatgtctcgtaagagcttcgcattctgcaaaatatatttagcaaatcctagatcactactgtcccagtcttctaagtttaa 367  Q
     |||   | || | ||| |||||||| ||||||  ||||||||||||||||||||| |||||||||  | ||||   ||| || || |||  |||| |||    
T  31262560 tagtgtcaactattattgccatgtcttgtaagatattcgcattctgcaaaatatatgtagcaaatcgcatatcat--ctg-ccgagcctttgaagtctaa 31262464  T
Q  368 aatagtacatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattcc 431  Q
     |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  31262463 tatagtacatgacctcaagtgacacgaaatacattcaagagccaaaattgggcatttccattcc 31262400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 427
Target Start/End: Complemental strand, 14308571 - 14308504
Alignment:
Q  360 aagtttaaaatagtacatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttcca 427  Q
    |||||||||||||||||||| ||||||||  || ||| |||||||||||||||| |||| ||||||||    
T  14308571 aagtttaaaatagtacatgatctgaggtgtgacaaaacacattcaagagccaaacttggacatttcca 14308504  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 32429344 - 32429410
Alignment:
Q  183 agtttacatcccggagaaatccttggacatgaggataactcttctataatttgactattttgcataa 249  Q
    ||||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||  |||||| ||||    
T  32429344 agtttacatcccggagacatccttggacaagaggacaactcttctataacttgataattttggataa 32429410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 430
Target Start/End: Original strand, 24005041 - 24005105
Alignment:
Q  366 aaaatagtacatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattc 430  Q
    |||||||||||||| ||||||||| | |||| ||||||| || || |||||||||||||||||||    
T  24005041 aaaatagtacatgatctgaggtgagaagaaacacattcaggaaccgaaattgggcatttccattc 24005105  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 23940052 - 23940112
Alignment:
Q  176 aaatgatagtttacatcccggagaaatccttggacatgaggataactcttctataatttga 236  Q
    |||||| ||||| ||| | ||||| ||||||||||| |||||||| |||||||||||||||    
T  23940052 aaatgaaagtttgcattcaggagacatccttggacaggaggataattcttctataatttga 23940112  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 431
Target Start/End: Original strand, 32429500 - 32429563
Alignment:
Q  366 aaaatagtacatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattcc 431  Q
    |||||||||||||||||||||||  ||||||  ||||||||||   |||||||||| |||||||||    
T  32429500 aaaatagtacatgacctgaggtg--acgaaacgcattcaagagttgaaattgggcagttccattcc 32429563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 24004879 - 24004920
Alignment:
Q  195 ggagaaatccttggacatgaggataactcttctataatttga 236  Q
    ||||| ||||||||||| ||||||||||||| ||||||||||    
T  24004879 ggagacatccttggacaggaggataactcttgtataatttga 24004920  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 14438148 - 14438209
Alignment:
Q  177 aatgatagtttacatcccggagaaatccttggacatgaggataactcttctataatttgact 238  Q
    ||||| ||||||||| | ||||||||||||||||| |||||||| |||||||||||||||||    
T  14438148 aatgaaagtttacatgctggagaaatccttggacaagaggataattcttctataatttgact 14438209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 431
Target Start/End: Complemental strand, 7818375 - 7818304
Alignment:
Q  360 aagtttaaaatagtacatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattcc 431  Q
    ||||||||||||||||||||  |||||| | |||||| |||||||||| |||||||| || |||||||||||    
T  7818375 aagtttaaaatagtacatgatttgaggttagacgaaacacattcaagaaccaaaatttggtatttccattcc 7818304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 436
Target Start/End: Complemental strand, 7861036 - 7860884
Alignment:
Q  281 gatttccatgtctcgtaagagcttcgcattctgcaaaatatatttagcaaatcctagatcactactgtcccagtcttctaagtttaaaatagtacatgac 380  Q
    ||||| |||||||||||||||  | ||||||||||||||||||||  |||||   |||||| |  ||||  || |||  ||||||| || | |||||||     
T  7861036 gattttcatgtctcgtaagagagttgcattctgcaaaatatattttacaaatttaagatcatt--tgtcg-agccttgaaagtttagaacaatacatgat 7860940  T
Q  381 ctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattccatggt 436  Q
    ||||||||| ||||||| |||| | || || |||||||||||||||||||| ||||    
T  7860939 ctgaggtgagacgaaatgcatttaggaaccgaaattgggcatttccattccttggt 7860884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 431
Target Start/End: Original strand, 14435664 - 14435740
Alignment:
Q  355 cttctaagtttaaaatagtacatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattcc 431  Q
    |||| ||||||||||| |||||||| ||||||||| |||||| |||||||| | || || |||| ||||||||||||    
T  14435664 cttcaaagtttaaaattgtacatgatctgaggtgagacgaaacacattcaataaccgaatttggccatttccattcc 14435740  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 405
Target Start/End: Complemental strand, 7815498 - 7815400
Alignment:
Q  304 tcgcattctgcaaaatatatttagcaaatcctagatcactactgtcccagtcttctaagtttaaaatagtacatgacctgaggtgacacgaaatacattc 403  Q
    |||||||||||||||||||||| | |||||  |||||| |    ||| || ||| ||||||||||||||||||||| ||||||||| | |||| ||||||    
T  7815498 tcgcattctgcaaaatatattttgtaaatcgaagatcattt---tccgagccttgtaagtttaaaatagtacatgatctgaggtgagatgaaacacattc 7815402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 431
Target Start/End: Complemental strand, 10416493 - 10416422
Alignment:
Q  360 aagtttaaaatagtacatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattcc 431  Q
    |||||||| ||||||||||| || |||| | |||||   ||||||||| ||||||||||| |||||||||||    
T  10416493 aagtttaatatagtacatgatctaaggttagacgaatcccattcaagaaccaaaattgggtatttccattcc 10416422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 14435489 - 14435544
Alignment:
Q  183 agtttacatcccggagaaatccttggacatgaggataactcttctataatttgact 238  Q
    ||||||||| | ||||| ||||||||||| || ||||| |||||||||||||||||    
T  14435489 agtttacatgcaggagatatccttggacaagaagataattcttctataatttgact 14435544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 7872281 - 7872237
Alignment:
Q  360 aagtttaaaatagtacatgacctgaggtgacacgaaatacattca 404  Q
    |||||||||||||||||||| || |||||| |||||| |||||||    
T  7872281 aagtttaaaatagtacatgatctaaggtgagacgaaacacattca 7872237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 431
Target Start/End: Original strand, 14438323 - 14438399
Alignment:
Q  355 cttctaagtttaaaatagtacatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattcc 431  Q
    |||| ||||||||||| ||||| || ||||||||| |||||| ||| ||| || || || ||||| |||||||||||    
T  14438323 cttcaaagtttaaaattgtacaggatctgaggtgaaacgaaacacactcaggaaccgaatttgggtatttccattcc 14438399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1089 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold1089
Description:

Target: scaffold1089; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 355 - 431
Target Start/End: Original strand, 690 - 766
Alignment:
Q  355 cttctaagtttaaaatagtacatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattcc 431  Q
    |||| ||||||||||| |||||||| ||||||||| |||||| |||||||||| || || |||| ||||||||||||    
T  690 cttcaaagtttaaaattgtacatgatctgaggtgagacgaaacacattcaagaaccgaatttggccatttccattcc 766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1089; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 521 - 572
Alignment:
Q  183 agtttacatcccggagaaatccttggacatgaggataactcttctataattt 234  Q
    ||||||||| | ||||||||||||||||| ||||| || |||||||||||||    
T  521 agtttacatgctggagaaatccttggacaagaggacaattcttctataattt 572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 431
Target Start/End: Original strand, 37996661 - 37996737
Alignment:
Q  355 cttctaagtttaaaatagtacatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattcc 431  Q
    |||| |||||||||||||||||||| || |||||| |||||||||| |||||| |   || ||||||||||||||||    
T  37996661 cttcaaagtttaaaatagtacatgatcttaggtgagacgaaatacactcaagaactgcaactgggcatttccattcc 37996737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 421
Target Start/End: Original strand, 28720077 - 28720191
Alignment:
Q  304 tcgcattctgcaaaatatatttagcaaatcctagatcactactgtcccagtcttctaagtttaaaatagtacatgacctgaggtgacacgaaatacattc 403  Q
    |||||||||||| |||||| || |||||||  |||||| |    ||| || |||| || ||||||||||||||||||||||||||| ||  || ||||||    
T  28720077 tcgcattctgcagaatatactttgcaaatcggagatcattt---tccgagccttcaaaatttaaaatagtacatgacctgaggtgagactcaacacattc 28720173  T
Q  404 aagagccaaaattgggca 421  Q
    || | |||||||||||||    
T  28720174 aatacccaaaattgggca 28720191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 431
Target Start/End: Complemental strand, 14018699 - 14018628
Alignment:
Q  360 aagtttaaaatagtacatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattcc 431  Q
    |||||||||||||||||||| || || ||| |||||| ||||||||||    ||||||||||||||||||||    
T  14018699 aagtttaaaatagtacatgatctaagatgagacgaaacacattcaagatttgaaattgggcatttccattcc 14018628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 431
Target Start/End: Original strand, 19316676 - 19316745
Alignment:
Q  362 gtttaaaatagtacatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattcc 431  Q
    ||||||| | |||||||| || |||||| | |||| |||||||||| |  ||||||||||||||||||||    
T  19316676 gtttaaagttgtacatgatctaaggtgagatgaaacacattcaagaactgaaattgggcatttccattcc 19316745  T

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