View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1916_low_9 (Length: 427)
Name: NF1916_low_9
Description: NF1916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1916_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 20 - 416
Target Start/End: Complemental strand, 46755684 - 46755288
Alignment:
| Q |
20 |
gtgctcttgttaaaccgacagtaaatcaaacatgataaattgttgatatcgatttttgagttttgaaatactaaatacagtttacacatcaacattgtga |
119 |
Q |
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| T |
46755684 |
gtgctcttgctaaaccgacagtaaatcaaacatgataaattgttgatatcgatttttgagttttgaaatactaaatacagtttacacatcaacattgtga |
46755585 |
T |
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| Q |
120 |
tcattgttaagtttgtatcgtaaatatagcagaaatagttaggctttgagatgtcagtacattcattagactccccctgctgcatgatgggtcgtattga |
219 |
Q |
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||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46755584 |
tcattgttaagtttgtatcataaatatagcagaaatagttcggctttgagatgtcagtacattcattagactccccctgctgcatgatgggtcgtattga |
46755485 |
T |
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| Q |
220 |
atgttgatctgaacctgtcctttagtcaagacgctgctgcttgtgctgaaattttgtgacttttacgggcgatgtctatttgcttttatgtgcgaattcc |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||| |
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| T |
46755484 |
atgttgatctgaacctgtcctttagtcaagacgctgctgcttgtgctgaaattttgtgacttttatgggcgatgtctatttgcttttatgggcgatgtcc |
46755385 |
T |
|
| Q |
320 |
acaacaagatcaattgaatttgaatgccagagtttctgacatcagtaggatccataataaacattaattcaatctccccaatcatactccatttcat |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46755384 |
acaacaagatcaattgaatttgaatgccagagtttctgacatcagtaggatccataataaacattaattcaatctccccaatcatactccatttcat |
46755288 |
T |
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