View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19170_low_1 (Length: 493)
Name: NF19170_low_1
Description: NF19170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19170_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 19 - 486
Target Start/End: Complemental strand, 41988759 - 41988278
Alignment:
| Q |
19 |
aaccttaaccattcagaaaaatataaatttggtaatctaatcaacacttggccacaaataatttgtctacattcctcactcatggtcatgaaattactca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41988759 |
aaccttaaccattcagaaaaatataaattaggtaatctaatcaatacttggccacaaataatttgtctacattcctcactcatggtcatgaaattactca |
41988660 |
T |
|
| Q |
119 |
aaatttctgaagatccggagtaggatcttatttctcatgtagttacaatgtctttcactcaatcaaatgaaatacaaaaatcaaagtaagaagttacaat |
218 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41988659 |
aaacttccgaagatccggagtaggatcttatttctcatgtagttacaatgtctttcactcaatcaaatgaaatacaaaaatcaaagtaagaagttacaat |
41988560 |
T |
|
| Q |
219 |
gtcttttcatgctctatagagatcacagctgtcaaga-aaaacaataaacaaaaaagagtgtcatactaagataatgtcatgttattgtcaagatttcga |
317 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41988559 |
gtcttttcatgctctatagggatcacagctgtcaagaaaaaacaataaacaaaaaagagtgtcatactaagataatgtcatgttattgtcaagatttcga |
41988460 |
T |
|
| Q |
318 |
tc-------------tttcataacatatctttcataaaggagatttacacgtgcggtcaaaagattccagttacatctccatcagactcaaggctttttc |
404 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41988459 |
tcattcaacacaccttctcataacatatctttcataaaggagatttacacgtgcggtcaaaagattccagttacatctccatcagactcaaggctttttc |
41988360 |
T |
|
| Q |
405 |
ttatcttttcagcacattaaacagtattctctttattatcaaaattcctacgtatatggcagtcatttaacagtattatcta |
486 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41988359 |
ttatcttttcagcacattaaacagtattctctttattatcaaaattcttacgtatatggcagtcatttaacagtattatcta |
41988278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University