View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19170_low_4 (Length: 280)
Name: NF19170_low_4
Description: NF19170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19170_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 14789613 - 14789351
Alignment:
| Q |
1 |
ttttccatatagtatgagttcaaatgtcatgaccaatgtaatgatctaactgttctataatatgcaaatatagatgtaaacatttgaatttacacggata |
100 |
Q |
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| T |
14789613 |
ttttccatatagtatgagttcaaatgtcatgaccaatgtaatgatctaactgttgtataatatgcaaatatagatgtaaacatttgaatttacatggata |
14789514 |
T |
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| Q |
101 |
tatagctaagaactctttactttgtcacttcatgtccttaatttcaagattaaattggaaaactgaactagtgtgccaaaatgttgaattcataccgaaa |
200 |
Q |
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| T |
14789513 |
tatagctaagaactctttactttgtcacttcatgtccttaatttcaagattaaattggaaaactgaactagtgtgccaaaatgttgaattcataccgaaa |
14789414 |
T |
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| Q |
201 |
gcatgtgttcccatgaacttagctcaattgtaatgataatgaataatatatgcaaggtctgaa |
263 |
Q |
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| T |
14789413 |
gcatgtgtcccagtgagcttagctcaattgtaacgataatgaataatatatgtaaggtttgaa |
14789351 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 23629897 - 23629845
Alignment:
| Q |
214 |
tgaacttagctcaattg-taatgataatgaataatatatgcaaggtctgaagt |
265 |
Q |
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| T |
23629897 |
tgaacttagctcaattggtaatgacaatgcataatatatgcaaggtatgaagt |
23629845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 26695369 - 26695320
Alignment:
| Q |
210 |
cccatgaacttagctcaattg-taatgataatgaataatatatgcaaggt |
258 |
Q |
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| T |
26695369 |
cccatgaacttagctcaattgttaaggataatacataatatatgcaaggt |
26695320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 40901196 - 40901151
Alignment:
| Q |
214 |
tgaacttagctcaattgtaatgataatgaataatatatgcaaggtc |
259 |
Q |
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| T |
40901196 |
tgaacttagctcaatggtaaggacaatgcataatatatgcaaggtc |
40901151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 261
Target Start/End: Original strand, 17853168 - 17853212
Alignment:
| Q |
218 |
cttagctcaattg-taatgataatgaataatatatgcaaggtctg |
261 |
Q |
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| T |
17853168 |
cttagctcaattggtattgataatgtataatatatgcaaggtctg |
17853212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 45096023 - 45096075
Alignment:
| Q |
210 |
cccatgaacttagctcaattg-taatgataatgaataatatatgcaaggtctg |
261 |
Q |
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||||||||||||||||| ||| ||| || |||| ||||||||||||||||||| |
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| T |
45096023 |
cccatgaacttagctcagttgataaggacaatgcataatatatgcaaggtctg |
45096075 |
T |
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