View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19171_high_1 (Length: 338)
Name: NF19171_high_1
Description: NF19171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19171_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 11983087 - 11983395
Alignment:
| Q |
19 |
ctaaacaataaacattatgagaaaaatttcactttagtcatctatcttcctaaacagtagtgtttacaagtttactcttactttatgatactaacattga |
118 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11983087 |
ctaaacaataaaaattatgagaaaaatttcactttagtcatctatcttcctaaacagtagtgtttacaagtttactcttactttatgatactaacattga |
11983186 |
T |
|
| Q |
119 |
ttgtatgaaaaccttaagaaatcattaacacaaggactaaaacagcttacctctaactttcccaaagtggatgatacattcacaattcttggtgaatcag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11983187 |
ttgtatgaaaaccttaagaaatcattaacacaaggactaaaacagcttacctctaactttcccaaagtggatgatacattcacaattcttggtgaatcag |
11983286 |
T |
|
| Q |
219 |
ataaatttaggagaggtagaagagattcagtagttattttagcaccataataatttatttgcaagcattcttcagctaactcatatgtttgagtcactgc |
318 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11983287 |
ataactttaggagaggtagaagagattcagtagttattttagcaccataataatttatttgcaagcattcttcagctaactcatatgtttgagtcactgc |
11983386 |
T |
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| Q |
319 |
ctttttctt |
327 |
Q |
| |
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||||||||| |
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| T |
11983387 |
ctttttctt |
11983395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 126 - 327
Target Start/End: Original strand, 11978889 - 11979090
Alignment:
| Q |
126 |
aaaaccttaagaaatcattaacacaaggactaaaacagcttacctctaactttcccaaagtggatgatacattcacaattcttggtgaatcagataaatt |
225 |
Q |
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||||||||||||| | ||||||||||||||||||| | ||||||| |||||| || ||||||||||||||||||||| ||||||||||||||||| || |
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| T |
11978889 |
aaaaccttaagaattgattaacacaaggactaaaatatcttacctttaacttccctgtagtggatgatacattcacaatccttggtgaatcagataactt |
11978988 |
T |
|
| Q |
226 |
taggagaggtagaagagattcagtagttattttagcaccataataatttatttgcaagcattcttcagctaactcatatgtttgagtcactgcctttttc |
325 |
Q |
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|||||| || ||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11978989 |
taggaggggcagaagtgattcagtggttattttagcaccataataatttatttgcaaacattcttcagctaactcatatgtttgagtcactgcctttttc |
11979088 |
T |
|
| Q |
326 |
tt |
327 |
Q |
| |
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|| |
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| T |
11979089 |
tt |
11979090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 166 - 322
Target Start/End: Original strand, 11973133 - 11973289
Alignment:
| Q |
166 |
tacctctaactttcccaaagtggatgatacattcacaattcttggtgaatcagataaatttaggagaggtagaagagattcagtagttattttagcacca |
265 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||||| || ||| |
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| T |
11973133 |
tacctctaactgccccaaagtggatgatacattcacaattcttggtgaatcagataactgaaggaggggtagaagtgattcagtagttatttttgctcca |
11973232 |
T |
|
| Q |
266 |
taataatttatttgcaagcattcttcagctaactcatatgtttgagtcactgccttt |
322 |
Q |
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| T |
11973233 |
taataatttgtttgcaagcattcttcagctaactcatatgtttgagtcattgccttt |
11973289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 319
Target Start/End: Original strand, 11996633 - 11996790
Alignment:
| Q |
162 |
agcttacctctaactttcccaaagtggatgatacattcacaattcttggtgaatcagataaatttaggagaggtagaagagattcagtagttattttagc |
261 |
Q |
| |
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|||||||||||| ||| |||||| ||||||||||| || | |||||||||||||||||| | ||||| || ||||| ||||| | | |||| || |
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| T |
11996633 |
agcttacctctatcttgcccaaaaatgatgatacattgactactcttggtgaatcagataattgaaggaggggaagaaggtattcaaatgctctttttgc |
11996732 |
T |
|
| Q |
262 |
accataataatttatttgcaagcattcttcagctaactcatatgtttgagtcactgcc |
319 |
Q |
| |
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||||||||||||||||| | |||||||| |||| ||||||||||||| || |||||| |
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| T |
11996733 |
cccataataatttatttgaatgcattctttagctgactcatatgtttgtgttactgcc |
11996790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 188 - 301
Target Start/End: Original strand, 12013062 - 12013175
Alignment:
| Q |
188 |
gatgatacattcacaattcttggtgaatcagataaatttaggagaggtagaagagattcagtagttattttagcaccataataatttatttgcaagcatt |
287 |
Q |
| |
|
||||||||||| || | |||||||||||||||||| | |||||||| ||||| ||||| ||| ||||||| ||||||||||||||||| | ||||| |
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| T |
12013062 |
gatgatacattgactactcttggtgaatcagataattgaaggagaggaagaaggtattcaaatgttcttttagccccataataatttatttgaatgcatt |
12013161 |
T |
|
| Q |
288 |
cttcagctaactca |
301 |
Q |
| |
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||| |||| ||||| |
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| T |
12013162 |
ctttagctgactca |
12013175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 319
Target Start/End: Original strand, 11987947 - 11988078
Alignment:
| Q |
188 |
gatgatacattcacaattcttggtgaatcagataaatttaggagaggtagaagagattcagtagttattttagcaccataataatttatttgcaagcatt |
287 |
Q |
| |
|
||||||||||| || | ||||||||||||||||| | ||||| || ||||| ||||| ||| | ||||| ||||||||||||||||| | ||||| |
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|
| T |
11987947 |
gatgatacattgactactcttggtgaatcagatagttgaaggaggggaagaaggtattcaaatgttctcttagccccataataatttatttggatgcatt |
11988046 |
T |
|
| Q |
288 |
cttcagctaactcatatgtttgagtcactgcc |
319 |
Q |
| |
|
||| |||| ||||||||||||| || |||||| |
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| T |
11988047 |
ctttagctgactcatatgtttgtgttactgcc |
11988078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 306
Target Start/End: Original strand, 12003148 - 12003266
Alignment:
| Q |
188 |
gatgatacattcacaattcttggtgaatcagataaatttaggagaggtagaagagattcagtagttattttagcaccataataatttatttgcaagcatt |
287 |
Q |
| |
|
||||||||||| || | | |||||||||||||||| | ||||| || ||||| ||||| ||| ||||||| |||||||||||||||| | ||||| |
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| T |
12003148 |
gatgatacattgactacttttggtgaatcagataattgaaggaggggaagaaggtattcaaatgttcttttagctccataataatttatttctatgcatt |
12003247 |
T |
|
| Q |
288 |
cttcagctaactcatatgt |
306 |
Q |
| |
|
||| |||| ||||| |||| |
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|
| T |
12003248 |
ctttagctgactcaaatgt |
12003266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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