View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19171_high_10 (Length: 371)

Name: NF19171_high_10
Description: NF19171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19171_high_10
NF19171_high_10
[»] chr6 (4 HSPs)
chr6 (1-357)||(2427971-2428320)
chr6 (216-277)||(24766035-24766096)
chr6 (240-288)||(6453027-6453075)
chr6 (217-277)||(8514124-8514184)
[»] chr2 (4 HSPs)
chr2 (18-177)||(1087345-1087507)
chr2 (225-289)||(18587187-18587251)
chr2 (214-269)||(45226123-45226178)
chr2 (216-299)||(27671294-27671378)
[»] chr4 (4 HSPs)
chr4 (19-177)||(48475554-48475717)
chr4 (216-289)||(31052985-31053058)
chr4 (230-298)||(54441185-54441253)
chr4 (245-300)||(31053044-31053100)
[»] chr3 (2 HSPs)
chr3 (19-97)||(36812680-36812757)
chr3 (216-277)||(44267144-44267205)
[»] chr7 (8 HSPs)
chr7 (214-297)||(18358792-18358876)
chr7 (216-264)||(21906728-21906776)
chr7 (245-300)||(23540181-23540237)
chr7 (222-265)||(28229238-28229281)
chr7 (215-266)||(44411171-44411222)
chr7 (216-282)||(21222838-21222904)
chr7 (181-265)||(2383650-2383734)
chr7 (217-277)||(23540224-23540284)
[»] chr5 (4 HSPs)
chr5 (245-300)||(14717340-14717396)
chr5 (216-300)||(42347654-42347739)
chr5 (214-265)||(32892046-32892097)
chr5 (242-289)||(41018291-41018338)
[»] chr8 (5 HSPs)
chr8 (217-274)||(25502306-25502363)
chr8 (216-264)||(35948725-35948773)
chr8 (216-298)||(10172444-10172527)
chr8 (216-277)||(37639014-37639076)
chr8 (214-262)||(39380188-39380236)
[»] chr1 (2 HSPs)
chr1 (240-289)||(1226039-1226088)
chr1 (219-300)||(22336420-22336502)
[»] scaffold0527 (2 HSPs)
scaffold0527 (216-276)||(2052-2112)
scaffold0527 (216-276)||(10115-10175)


Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 2428320 - 2427971
Alignment:
Q  1 caacatgcacgttttcactttggaccaaaacaccattattttaaattagattgagagggtaggaaagtaattttgttgttgtttaatctcacttctccat 100  Q
    |||||||||| |||| |||||| || ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2428320 caacatgcacatttttactttgaacaaaaacactattattttaaattagattgagagggtagaaaagtaattttgttgttgtttaatctcacttctccat 2428221  T
Q  101 ctaccattgacttcttctccaacctcccatctctgatggtatttttgtttgttaattgaaattaaactatataaaaacacatttatgcatacatccattg 200  Q
    |||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  2428220 ctaccattgacttcttctccaacctg-------tgatggtatttttgtttgttaattgaaattaaactatataaaaacacatttatgcatacattcaatg 2428128  T
Q  201 acgtgttgagactttaattaatgaatataaaaacacattaattgtcatattcattaattgatgtgataacacatcataagatgcatgtg-aaaataatta 299  Q
    |||||||| ||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2428127 acgtgttgtgacttcaattaatgaatatgaaaacac-ttaattgtcatattcattaattgatgtgataacacatcataagatgcatgtgtaaaataatta 2428029  T
Q  300 ttctttaatttggaaaccctcctaatttatttcgtcatttgacttatttgcttttgtc 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2428028 ttctttaatttggaaaccctcctaatttatttcgtcatttgacttatttgcttctgtc 2427971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 24766096 - 24766035
Alignment:
Q  216 aattaatgaatataaaaacacattaattgtcatattcattaattgatgtgataacacatcat 277  Q
    ||||||| ||||| |||||||||   ||||||||||||||||||||||||  ||||||||||    
T  24766096 aattaataaatatgaaaacacatgcgttgtcatattcattaattgatgtggcaacacatcat 24766035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 6453027 - 6453075
Alignment:
Q  240 aattgtcatattcattaattgatgtgataacacatcataagatgcatgt 288  Q
    |||| ||||||||||||||||| |||| |||||||||| ||||||||||    
T  6453027 aattatcatattcattaattgacgtgacaacacatcattagatgcatgt 6453075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 8514124 - 8514184
Alignment:
Q  217 attaatgaatataaaaacacattaattgtcatattcattaattgatgtgataacacatcat 277  Q
    ||||||||| ||||||||| |  | |||||||||| |||||||||||||| || |||||||    
T  8514124 attaatgaagataaaaacataagagttgtcatatttattaattgatgtgacaatacatcat 8514184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 1087507 - 1087345
Alignment:
Q  18 ctttggaccaaaacaccattattttaaattagattgagagggtaggaaagtaattttgttgttgtttaatctcacttctccatctaccattgacttcttc 117  Q
    |||||||| | || ||||||| |||||||| |||| ||||||||| ||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||    
T  1087507 ctttggacaagaaaaccattactttaaattggatttagagggtagaaaagtaactttgttgttgttttatctcacttctccatcttccattgacttcttc 1087408  T
Q  118 tc---caacctcccatctctgatggtatttttgtttgttaattgaaattaaactatataaaaa 177  Q
    ||   || | || ||||| ||||| | ||| | ||| | ||||||||||||| ||||||||||    
T  1087407 tcaaacatcatcgcatctgtgatgttttttatttttttaaattgaaattaaattatataaaaa 1087345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 18587251 - 18587187
Alignment:
Q  225 atataaaaacacattaattgtcatattcattaattgatgtgataacacatcataagatgcatgtg 289  Q
    ||||||||||| || ||| |||||||||||||||||| |||||||||||| ||  ||||||||||    
T  18587251 atataaaaacaaatgaatagtcatattcattaattgacgtgataacacattattggatgcatgtg 18587187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 45226178 - 45226123
Alignment:
Q  214 ttaattaatgaatataaaaacacattaattgtcatattcattaattgatgtgataa 269  Q
    ||||||||| ||||||||||||||| |||| ||||||| | || ||||||||||||    
T  45226178 ttaattaataaatataaaaacacatgaattatcatatttactatttgatgtgataa 45226123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 299
Target Start/End: Complemental strand, 27671378 - 27671294
Alignment:
Q  216 aattaatgaatataaaaacacattaattgtcatattcattaattgatgtgataacacatcataagatgcatgtg-aaaataatta 299  Q
    ||||||||||||| ||| ||||| | || | ||||||||||||| |||||| ||||||| || ||||  ||||| ||||||||||    
T  27671378 aattaatgaatatgaaagcacatgagttattatattcattaatttatgtgacaacacattatcagataaatgtgtaaaataatta 27671294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 48475717 - 48475554
Alignment:
Q  19 tttggaccaaaacaccattattttaaattagattgagagggtaggaaagtaattttgttgttgtttaatctcacttctccatctaccattgacttcttct 118  Q
    ||||||| |||| ||||||| ||||||||||||| ||||| ||| ||  ||| ||||||||||||| |||||| |||||||||| ||||  |||||||||    
T  48475717 tttggacaaaaaaaccattactttaaattagatttagaggatagaaagataactttgttgttgttttatctcatttctccatcttccatcaacttcttct 48475618  T
Q  119 c---caacctcccatctctgatg--gtatttttgtttgttaattgaaattaaactatataaaaa 177  Q
    |   || | |||||||| |||||   | ||||| ||| ||||||||||||||| ||||||||||    
T  48475617 caaacatcatcccatctgtgatgattttttttttttttttaattgaaattaaattatataaaaa 48475554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 289
Target Start/End: Complemental strand, 31053058 - 31052985
Alignment:
Q  216 aattaatgaatataaaaacacattaattgtcatattcattaattgatgtgataacacatcataagatgcatgtg 289  Q
    ||||||||||||| ||||||||  | ||||||||||||||||| |||||   |||||| |||  ||||||||||    
T  31053058 aattaatgaatatgaaaacacacgagttgtcatattcattaatcgatgtagcaacacaacattggatgcatgtg 31052985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 54441253 - 54441185
Alignment:
Q  230 aaaacacattaattgtcatattcattaattgatgtgataacacatcataagatgcatgtg-aaaataatt 298  Q
    ||||||||| |||| || ||||||||||||||||||  |||||||||| |||||||| || |||||||||    
T  54441253 aaaacacatgaattatcgtattcattaattgatgtg-gaacacatcattagatgcatatgtaaaataatt 54441185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 300
Target Start/End: Original strand, 31053044 - 31053100
Alignment:
Q  245 tcatattcattaattgatgtgataacacatcataagatgcatgtg-aaaataattat 300  Q
    ||||||||||||||||| | || ||||||||||  |||||||||| |||||||||||    
T  31053044 tcatattcattaattgacgcgacaacacatcattggatgcatgtgtaaaataattat 31053100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 36812680 - 36812757
Alignment:
Q  19 tttggaccaaaacaccattattttaaattagattgagagggtaggaaagtaattttgttgttgtttaatctcacttctc 97  Q
    ||||||| |||| |||||| |||||||||||||| ||||||||||||||||| |||| |||||||| |||||| |||||    
T  36812680 tttggacaaaaataccattgttttaaattagatttagagggtaggaaagtaa-tttgctgttgttttatctcatttctc 36812757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 44267144 - 44267205
Alignment:
Q  216 aattaatgaatataaaaacacattaattgtcatattcattaattgatgtgataacacatcat 277  Q
    |||||||||| |||||||||||||| ||||| | ||||||| |||| |||| || |||||||    
T  44267144 aattaatgaacataaaaacacattagttgtcgtgttcattatttgacgtgagaatacatcat 44267205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 297
Target Start/End: Complemental strand, 18358876 - 18358792
Alignment:
Q  214 ttaattaatgaatataaaaacacattaattgtcatattcattaattgatgtgataacacatcataagatgcatgtg-aaaataat 297  Q
    |||||||||||| || ||||||||| | ||||||||||||||||||||  ||| ||||||||||  |||||||||| ||||||||    
T  18358876 ttaattaatgaacatgaaaacacatgacttgtcatattcattaattgacatgacaacacatcatttgatgcatgtgcaaaataat 18358792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 21906776 - 21906728
Alignment:
Q  216 aattaatgaatataaaaacacattaattgtcatattcattaattgatgt 264  Q
    ||||||||||||| ||||||||| | |||||||||| ||||||||||||    
T  21906776 aattaatgaatatgaaaacacataagttgtcatattaattaattgatgt 21906728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 300
Target Start/End: Complemental strand, 23540237 - 23540181
Alignment:
Q  245 tcatattcattaattgatgtgataacacatcataagatgcatgtg-aaaataattat 300  Q
    |||||||||||||| || ||||||||||||||| |||| |||||| |||||||||||    
T  23540237 tcatattcattaatagacgtgataacacatcattagatacatgtgcaaaataattat 23540181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 265
Target Start/End: Original strand, 28229238 - 28229281
Alignment:
Q  222 tgaatataaaaacacattaattgtcatattcattaattgatgtg 265  Q
    ||||||| ||||||||| ||||||||||| ||||||||||||||    
T  28229238 tgaatatgaaaacacatgaattgtcatatccattaattgatgtg 28229281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 44411171 - 44411222
Alignment:
Q  215 taattaatgaatataaaaacacattaattgtcatattcattaattgatgtga 266  Q
    |||||||||||||||||||||||| | ||||  |||||||||||| ||||||    
T  44411171 taattaatgaatataaaaacacatgagttgttgtattcattaattaatgtga 44411222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 282
Target Start/End: Original strand, 21222838 - 21222904
Alignment:
Q  216 aattaatgaatataaaaacacattaattgtcatattcattaattgatgtgataacacatcataagat 282  Q
    ||||||| ||||||||||||  | | ||||||||||||||||||||||||  |||| ||||| ||||    
T  21222838 aattaataaatataaaaacatgtaagttgtcatattcattaattgatgtgtcaacatatcattagat 21222904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 265
Target Start/End: Original strand, 2383650 - 2383734
Alignment:
Q  181 atttatgcatacatccattgacgtgttgagactttaattaatgaatataaaaacacattaattgtcatattcattaattgatgtg 265  Q
    |||||| ||| ||| || ||| ||||| | || ||||||||| |||||||||| | || ||||||||||| |||||||| |||||    
T  2383650 atttatacattcattcaatgatgtgttcacacgttaattaataaatataaaaataaataaattgtcatatccattaattaatgtg 2383734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 23540224 - 23540284
Alignment:
Q  217 attaatgaatataaaaacacattaattgtcatattcattaattgatgtgataacacatcat 277  Q
    |||||||||||| |||| | || ||||||| |||| |||||||||||||| ||| ||||||    
T  23540224 attaatgaatatgaaaatatatgaattgtcttatttattaattgatgtgacaacgcatcat 23540284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 300
Target Start/End: Original strand, 14717340 - 14717396
Alignment:
Q  245 tcatattcattaattgatgtgataacacatcataagatgcatgtg-aaaataattat 300  Q
    |||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||    
T  14717340 tcatattcattaattgatgtgacaacacatcattagatgcatgtgtaaaataattat 14717396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 300
Target Start/End: Complemental strand, 42347739 - 42347654
Alignment:
Q  216 aattaatgaatataaaaacacattaattgtcatattcattaattgatgtgataacacatcataagatgcatgtg-aaaataattat 300  Q
    ||||||||| ||| |||||| || | |||| ||||||||| ||||||||||||| |||||||  |||||||| | |||||||||||    
T  42347739 aattaatgagtatgaaaacaaatgagttgttatattcattcattgatgtgataatacatcattggatgcatgcgtaaaataattat 42347654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 32892046 - 32892097
Alignment:
Q  214 ttaattaatgaatataaaaacacattaattgtcatattcattaattgatgtg 265  Q
    ||||||||||||||| ||||||||| | ||||| |||||||| |||||||||    
T  32892046 ttaattaatgaatatgaaaacacatgagttgtcgtattcattgattgatgtg 32892097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 41018291 - 41018338
Alignment:
Q  242 ttgtcatattcattaattgatgtgataacacatcataagatgcatgtg 289  Q
    |||||||||||||||||||||| |  |||||||||| |||||||||||    
T  41018291 ttgtcatattcattaattgatggggcaacacatcattagatgcatgtg 41018338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 25502363 - 25502306
Alignment:
Q  217 attaatgaatataaaaacacattaattgtcatattcattaattgatgtgataacacat 274  Q
    |||||| ||||||||||||||| | |||| |||||||||||||||||||| |||||||    
T  25502363 attaattaatataaaaacacataagttgttatattcattaattgatgtgacaacacat 25502306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 35948725 - 35948773
Alignment:
Q  216 aattaatgaatataaaaacacattaattgtcatattcattaattgatgt 264  Q
    ||||||| |||||||||||| || |||||||||||||| ||||||||||    
T  35948725 aattaataaatataaaaacatatgaattgtcatattcactaattgatgt 35948773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 298
Target Start/End: Original strand, 10172444 - 10172527
Alignment:
Q  216 aattaatgaatataaaaacacattaattgtcatattcattaattgatgtgataacacatcataagatgcatgtg-aaaataatt 298  Q
    ||||||||||| | |||||| || | |||||||||||| ||||||| |||| ||| ||||||  |||||||||| |||||||||    
T  10172444 aattaatgaatgtgaaaacatatgagttgtcatattcactaattgacgtgacaacgcatcatttgatgcatgtgtaaaataatt 10172527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 37639076 - 37639014
Alignment:
Q  216 aattaatgaatataaaaa-cacattaattgtcatattcattaattgatgtgataacacatcat 277  Q
    ||||||| |||||||||| ||||| | || ||||||| | |||||||||||||||||||||||    
T  37639076 aattaataaatataaaaaacacataagttatcatatttactaattgatgtgataacacatcat 37639014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 39380188 - 39380236
Alignment:
Q  214 ttaattaatgaatataaaaacacattaattgtcatattcattaattgat 262  Q
    ||||||||| |||| ||||||| || |||||||||||||||| ||||||    
T  39380188 ttaattaataaataaaaaaacatatgaattgtcatattcattcattgat 39380236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 1226088 - 1226039
Alignment:
Q  240 aattgtcatattcattaattgatgtgataacacatcataagatgcatgtg 289  Q
    |||| ||||||| ||||||||||||||||| ||||||| |||||||||||    
T  1226088 aattctcatatttattaattgatgtgataatacatcattagatgcatgtg 1226039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 300
Target Start/End: Complemental strand, 22336502 - 22336420
Alignment:
Q  219 taatgaatataaaaacacattaattgtcatattcattaattgatgtgataacacatcataagatgcatgtg-aaaataattat 300  Q
    |||| ||| ||||||||||  | ||||||||||||||||||||||| || | |||| ||  |||||||||| |||||||||||    
T  22336502 taataaatttaaaaacacacgagttgtcatattcattaattgatgtaatcatacattatttgatgcatgtgtaaaataattat 22336420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 2052 - 2112
Alignment:
Q  216 aattaatgaatataaaaacacattaattgtcatattcattaattgatgtgataacacatca 276  Q
    |||||||||||||||||| |||||| | |||| ||| ||||||||| |||| || ||||||    
T  2052 aattaatgaatataaaaatacattagtggtcaaatttattaattgaagtgacaatacatca 2112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 10115 - 10175
Alignment:
Q  216 aattaatgaatataaaaacacattaattgtcatattcattaattgatgtgataacacatca 276  Q
    |||||||||||||||||| |||||| | |||| ||| ||||||||| |||| || ||||||    
T  10115 aattaatgaatataaaaatacattagtggtcaaatttattaattgaagtgacaatacatca 10175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University