View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19171_high_16 (Length: 316)
Name: NF19171_high_16
Description: NF19171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19171_high_16 |
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| [»] scaffold0363 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 25 - 268
Target Start/End: Original strand, 32635150 - 32635393
Alignment:
| Q |
25 |
catcatcaatattgcatacaaaaaatcttgaatattttttatctcccgtcagtgatagtcttgtggatcttcctgaaaactttgccaattgtatttggct |
124 |
Q |
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| T |
32635150 |
catcatcaatattgcatacaaaaaatcttgaatattttttatctcctatcagtgatagtcttgtggatcttcctgaaaactttgccaattgtatctggct |
32635249 |
T |
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| Q |
125 |
tgcgaattcactgaaaggtgaacgtgactcttccatcaccttacataaagtacttcctactcctgctttcgtgaatgtaaaacacttgatattatttggt |
224 |
Q |
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| T |
32635250 |
tgcgaattcactgaaaggtgaacgtgactcttccatcatcttacataaaatacttcctagtcctgctttcctgagtgtaaaacacttaatattatttggt |
32635349 |
T |
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| Q |
225 |
acaaatgttcctttcttgtctgaaatcccagacaatatttcctt |
268 |
Q |
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| T |
32635350 |
aatgatgttcctttcttgtctgaaatcccagacaacatttcctt |
32635393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 75 - 206
Target Start/End: Complemental strand, 5605493 - 5605362
Alignment:
| Q |
75 |
agtgatagtcttgtggatcttcctgaaaactttgccaattgtatttggcttgcgaattcactgaaaggtgaacgtgactcttccatcaccttacataaag |
174 |
Q |
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| T |
5605493 |
agtgattgtcttgttgatcttcctgtaaacttttgcaatgatatttggctttcaagtccactgaacagtgaacatgactctttcataaccttagataaag |
5605394 |
T |
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| Q |
175 |
tacttcctactcctgctttcgtgaatgtaaaa |
206 |
Q |
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| T |
5605393 |
tactttctagtcctgccttcgtcagtgtaaaa |
5605362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 75 - 206
Target Start/End: Original strand, 5629877 - 5630008
Alignment:
| Q |
75 |
agtgatagtcttgtggatcttcctgaaaactttgccaattgtatttggcttgcgaattcactgaaaggtgaacgtgactcttccatcaccttacataaag |
174 |
Q |
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| T |
5629877 |
agtgattgtcttgttgatcttcctgtaaacttttgcaatgatatttggctttcaagtccactgaacagtgaacatgactctttcataaccttagataaag |
5629976 |
T |
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| Q |
175 |
tacttcctactcctgctttcgtgaatgtaaaa |
206 |
Q |
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| T |
5629977 |
tactttctagtcctgccttcgtcagtgtaaaa |
5630008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 14406558 - 14406641
Alignment:
| Q |
25 |
catcatcaatattgcatacaaaaaatcttgaatattttttatctcccgtcagtgatagtcttgtggatcttcctgaaaactttg |
108 |
Q |
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| T |
14406558 |
catcatcattattgcatgcaaaaaatcttggaaactttttctttccaatcagtgattgtcttgtgaatcttactgaaaactttg |
14406641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 107
Target Start/End: Original strand, 13167080 - 13167114
Alignment:
| Q |
73 |
tcagtgatagtcttgtggatcttcctgaaaacttt |
107 |
Q |
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| T |
13167080 |
tcagtgattgtcttgtggatcttcctgaaaacttt |
13167114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 6308488 - 6308451
Alignment:
| Q |
73 |
tcagtgatagtcttgtggatcttcctgaaaactttgcc |
110 |
Q |
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| T |
6308488 |
tcagtgattgtcttgtggatcttccagaaaactttgcc |
6308451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 107
Target Start/End: Original strand, 5553338 - 5553370
Alignment:
| Q |
75 |
agtgatagtcttgtggatcttcctgaaaacttt |
107 |
Q |
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| T |
5553338 |
agtgattgtcttgtggatcttcctgaaaacttt |
5553370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 108
Target Start/End: Complemental strand, 12295 - 12212
Alignment:
| Q |
25 |
catcatcaatattgcatacaaaaaatcttgaatattttttatctcccgtcagtgatagtcttgtggatcttcctgaaaactttg |
108 |
Q |
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| T |
12295 |
catcatcattattgcatgcaaaaaatcttggaaactttttctttccaatcagtgattgtcttgtgaatcttactgaaaactttg |
12212 |
T |
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