View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19171_high_1_N (Length: 570)
Name: NF19171_high_1_N
Description: NF19171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19171_high_1_N |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 126 - 558
Target Start/End: Original strand, 31058191 - 31058625
Alignment:
| Q |
126 |
ttccaaagtgattaacttccgatttctactcaaaagttgcttctacacgaagcagaaggttgcgaaaaatggagactgggatagattcatggatat--ac |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
31058191 |
ttccaaagtgattaacttccgatttctactcaaaagttgcttctacacgaagcaaaaggttgcgaaaaatggagactgggatacattcatggatatatac |
31058290 |
T |
|
| Q |
224 |
tagttctaataatttttaggattgtcttaattcttgatattgaatattactttgaccttttcataattgaatgtttggattgatagaatgagatggaata |
323 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31058291 |
tagttctaataattttgaggattgtcttaattcttgatattgaatattactttgaccttttcacaattgaatgtttggattgatagaatgtgatggaata |
31058390 |
T |
|
| Q |
324 |
aagtggtatgaaattgaatataataagattcttttgtttggattatttaaaagtaatgttatctatttcatcacttaccatatgaatggatatcccagaa |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31058391 |
aagtggtatgaaattgaatataataagattcttttgtttagattatttaaaagtaatggtatctatttcatcacttaccataagaatggatatcccagaa |
31058490 |
T |
|
| Q |
424 |
agaatgtgatctctagtatgcctcttgtgtatgaatggatatccagagagaatctgtttttaactttgtattcacaattcacttatgtatcctcatgttg |
523 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31058491 |
agaatgtgatctccagtatgcctcttgtgtatgaatggatatccagagagaatctgtttttaactttgtattcacaattcacttatgtatcctcatgttg |
31058590 |
T |
|
| Q |
524 |
gagcaatagcaacgtctcaacccatcgtgttgtaa |
558 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
31058591 |
gagcaatagcaacgtctcaaaccatcgtgttgtaa |
31058625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 31058042 - 31058081
Alignment:
| Q |
13 |
aatatgagtcactgcctaacattgtaagtgtttagaatat |
52 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31058042 |
aatatgagccactgcctaacattgtaagtgtttagaatat |
31058081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 328
Target Start/End: Complemental strand, 2928537 - 2928503
Alignment:
| Q |
294 |
atgtttggattgatagaatgagatggaataaagtg |
328 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2928537 |
atgtttggattgatagaatgagatggaatgaagtg |
2928503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University