View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19171_high_2 (Length: 543)
Name: NF19171_high_2
Description: NF19171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19171_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 7627866 - 7627363
Alignment:
| Q |
1 |
tattcaaatatcatttctcatgnnnnnnnngtcctcatcaaatgttataatttgtactactcttattaagcactcaactatattcaagtagaataataat |
100 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627866 |
tattcaaatatcatttctcatgttttttttgtcctcatcaaatgttataatttgtactactcttattaagcactcaactatattcaagtagaataataat |
7627767 |
T |
|
| Q |
101 |
aaaaactaaacttttgcttatattatactccctccgtttctttataactatagcttttatataannnnnnn-gtttctaattaactgtcacattcaaagt |
199 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||| |||||||| |
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| T |
7627766 |
aaaaactaaacttttgcttatattatactccctccgtttctttataactataacttttacataaatttttttgtttctaattaactgtcactttcaaagt |
7627667 |
T |
|
| Q |
200 |
gactgatgagtattttgcaagaaccctagcaattgcaaacaagatgtctgcacatggagaaagaaaggaaaaacaactatggtggagaagattcttaggt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627666 |
gactgatgagtattttgcaagaaccctagcaattgcaaacaagatgtctgcacatggagaaagaaaggaaaaacaactatggtggagaagattcttaggt |
7627567 |
T |
|
| Q |
300 |
ccatgacttcaagattcaactatgtggtttgctccatagaagaatccaatgacgttaccactttttccattaatgaactgcaaagcaattttcttgtcca |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7627566 |
ccatgacttcaagattcaactatgtggtttgctccatagaagaatccaatgaccttaccactttttccattaatgaactgcaaagcaattttcttgttca |
7627467 |
T |
|
| Q |
400 |
agaagcaagaatgacacttcacaagaaaaaggaagaagaacaactcttgaaggtgtcaaattcaagaagaggaagaactgaagatggtggttttactcat |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7627466 |
agaagcaagaatgacacttcacaagaaaaaggaagaagaacaactcttgaaggtgtcaaattcaagaagaggaagaactggagatggtggttttactcat |
7627367 |
T |
|
| Q |
500 |
ggta |
503 |
Q |
| |
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|||| |
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| T |
7627366 |
ggta |
7627363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 7636458 - 7636380
Alignment:
| Q |
47 |
ataatttgtactactcttattaagc-actcaactatattcaagtagaataataataaaaactaaacttttgcttatatt |
124 |
Q |
| |
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|||||||||||||||||||| || | |||||| |||||| ||||||||||||| ||||| |||||||| |||||||| |
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| T |
7636458 |
ataatttgtactactcttatcaacccactcaattatatttgagtagaataataagaaaaatcaaactttttcttatatt |
7636380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 375
Target Start/End: Original strand, 11356770 - 11356846
Alignment:
| Q |
299 |
tccatgacttcaagattcaactatgtggtttgctccatagaagaatccaatgacgttaccactttttccattaatga |
375 |
Q |
| |
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|||||||| | ||||||| ||||| |||| ||| |||||||||||||||||| ||||| | ||| |||||| |||| |
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| T |
11356770 |
tccatgacataaagattcgactatttggtgtgcgtcatagaagaatccaatgatgttacaattttatccattgatga |
11356846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 31 - 515
Target Start/End: Original strand, 8920931 - 8921420
Alignment:
| Q |
31 |
gtcctcatcaaatgttataatttgtactactcttattaagcactcaactatattcaagtagaataataataaaaactaaacttttgcttatattatactc |
130 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8920931 |
gtcctcatcaaatgttatagtttgtcctactcttattaagcactcaactatattcgagtagaataataataaaaactaaacttttgcttatattatactc |
8921030 |
T |
|
| Q |
131 |
cctccgtttctttataactatagcttttatataannnnnnngtttctaattaactgtcacattcaaagtgact-----gatgagtattttgcaagaaccc |
225 |
Q |
| |
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|||||||| |||||||||| | ||||||| |||| ||||||||||||||||||| |||||||||| | |||||||||||||||||||||| |
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| T |
8921031 |
cctccgttcctttataactgtcgcttttacataatttttttgtttctaattaactgtcactttcaaagtgaatcagtggatgagtattttgcaagaaccc |
8921130 |
T |
|
| Q |
226 |
tagcaattgcaaacaagatgtctgcacatggagaaagaaaggaaaaacaactatggtggagaagattcttaggtccatgacttcaagattcaactatgtg |
325 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8921131 |
tagcaattgcaaacaagatgtatgcacatggagaaagaaaggaaaaaaaactatggtggagaagattcttaggtccatgacttcaagattcaactatgtg |
8921230 |
T |
|
| Q |
326 |
gtttgctccatagaagaatccaatgacgttaccactttttccattaatgaactgcaaagcaattttcttgtccaagaagcaagaatgacacttcacaaga |
425 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
8921231 |
gtttgctccatagaagaatccaatgatgttaccgctttttccattaatgaactgcaaagcaattttcttgttcaagaagcatgaatgacacttcacaaga |
8921330 |
T |
|
| Q |
426 |
aaaaggaagaagaacaactcttgaaggtgtcaaattcaagaagaggaagaactgaagatggtggttttactcatggtagaggaagaaatg |
515 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
8921331 |
aaaaggaagaagaacaactcttgaaggtgtcaaattcaagaagaggaagagctggagatggtggttttactcatggtagaggaagaaatg |
8921420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 8914301 - 8914379
Alignment:
| Q |
47 |
ataatttgtactactcttattaagc-actcaactatattcaagtagaataataataaaaactaaacttttgcttatatt |
124 |
Q |
| |
|
|||||||||||||||||||| || | |||||| |||||| ||||||||||||| ||||| |||||||| |||||||| |
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| T |
8914301 |
ataatttgtactactcttatcaacccactcaattatatttgagtagaataataagaaaaatcaaactttttcttatatt |
8914379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 284 - 413
Target Start/End: Complemental strand, 35372221 - 35372092
Alignment:
| Q |
284 |
gagaagattcttaggtccatgacttcaagattcaactatgtggtttgctccatagaagaatccaatgacgttaccactttttccattaatgaactgcaaa |
383 |
Q |
| |
|
||||||||| |||| |||||||| |||||||||||||||||||| || | ||||||||||| ||||| ||||||||| |||| ||| ||||||||||| |
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| T |
35372221 |
gagaagatttttagatccatgacatcaagattcaactatgtggtgtgtactatagaagaatctaatgatgttaccactctttctattgatgaactgcaat |
35372122 |
T |
|
| Q |
384 |
gcaattttcttgtccaagaagcaagaatga |
413 |
Q |
| |
|
||| || ||||| |||||||||||||||| |
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|
| T |
35372121 |
gcagattacttgtgcaagaagcaagaatga |
35372092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 344
Target Start/End: Complemental strand, 24659113 - 24659053
Alignment:
| Q |
284 |
gagaagattcttaggtccatgacttcaagattcaactatgtggtttgctccatagaagaat |
344 |
Q |
| |
|
||||||||||| | |||||||| |||||||||||||||||||| | ||| |||||||||| |
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|
| T |
24659113 |
gagaagattctcatatccatgacatcaagattcaactatgtggtctactctatagaagaat |
24659053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 10784361 - 10784303
Alignment:
| Q |
299 |
tccatgacttcaagattcaactatgtggtttgctccatagaagaatccaatgacgttac |
357 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||||||| || |||||||| ||||| ||||| |
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|
| T |
10784361 |
tccatgacatcaagattcaattatgttgtttgctcaattgaagaatcaaatgatgttac |
10784303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 199
Target Start/End: Original strand, 6660925 - 6661006
Alignment:
| Q |
118 |
ttatattatactccctccgtttctttataactatagcttttatataannnnnnngtttctaattaactgtcacattcaaagt |
199 |
Q |
| |
|
||||||| ||||||||||||| |||||||||| | |||||| |||| |||||||||||| |||||| |||||||| |
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|
| T |
6660925 |
ttatattgtactccctccgttcctttataactgtcacttttacataatttttttgtttctaattaagtgtcactttcaaagt |
6661006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 199
Target Start/End: Original strand, 6741327 - 6741408
Alignment:
| Q |
118 |
ttatattatactccctccgtttctttataactatagcttttatataannnnnnngtttctaattaactgtcacattcaaagt |
199 |
Q |
| |
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||||||| ||||||||||||| |||||||||| | |||||| |||| |||||||||||| |||||| |||||||| |
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| T |
6741327 |
ttatattgtactccctccgttcctttataactgtcacttttacataatttttttgtttctaattaagtgtcactttcaaagt |
6741408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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