View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19171_high_3 (Length: 535)

Name: NF19171_high_3
Description: NF19171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19171_high_3
NF19171_high_3
[»] chr5 (6 HSPs)
chr5 (1-523)||(37704454-37704976)
chr5 (159-522)||(37698974-37699349)
chr5 (219-523)||(37437520-37437823)
chr5 (275-523)||(37698636-37698864)
chr5 (59-101)||(30384256-30384298)
chr5 (64-100)||(1630012-1630048)
[»] chr4 (2 HSPs)
chr4 (159-395)||(16840857-16841109)
chr4 (59-99)||(31095092-31095132)
[»] chr6 (2 HSPs)
chr6 (57-99)||(17411089-17411131)
chr6 (57-100)||(196244-196287)
[»] chr8 (1 HSPs)
chr8 (54-99)||(18080600-18080645)
[»] chr3 (1 HSPs)
chr3 (57-100)||(44291420-44291463)
[»] chr7 (2 HSPs)
chr7 (62-100)||(12422352-12422390)
chr7 (57-89)||(32857805-32857837)


Alignment Details
Target: chr5 (Bit Score: 463; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Complemental strand, 37704976 - 37704454
Alignment:
Q  1 cctaagtgttatgaaaaatacttacataactaacttgttttttgagcaactacataactaacttgttataattaaataacttaaatgacgtaagtgatac 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37704976 cctaagtgttacgaaaaatacttacataactaacttgttttttgagcaactacataactaacttgttataattaaataacttaaatgacgcaagtgatac 37704877  T
Q  101 gnnnnnnnnnnnnnnnnccgatttgttataattaaataacttaaaagtatcgtaatttgctctttaaagtatgtacatttgaagaagtctaagtctccga 200  Q
    |                ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704876 gaaaaaatcttaaaaaaccgatttgttataattaaataacttaaaagtctcgtaatttgctctttaaagtatgtacatttgaagaagtctaagtctccga 37704777  T
Q  201 ttctaaatacaattaatgttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttatcacaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704776 ttctaaatacaattaatgttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttatcacaa 37704677  T
Q  301 cttgaaataagattccaactttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704676 cttgaaataagattccaactttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggt 37704577  T
Q  401 tactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaa 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704576 tactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaa 37704477  T
Q  501 tctaataagtcaacctttttggt 523  Q
    |||||||||||||||||||||||    
T  37704476 tctaataagtcaacctttttggt 37704454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 159 - 522
Target Start/End: Complemental strand, 37699349 - 37698974
Alignment:
Q  159 gctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaatgtt------attttcttcatttcaggtgtatttttaagcac 252  Q
    |||||||||||| ||| || ||||||||||||||||||||| | ||||||||||||||||||      ||||||||||||| |||||||||||||||||     
T  37699349 gctctttaaagtctgttcagttgaagaagtctaagtctccgttgctaaatacaattaatgttgttattattttcttcattttaggtgtatttttaagcaa 37699250  T
Q  253 attactcactgtgattgctacttaaatgaatttgttatcttat---cacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct-g 348  Q
    |||||||| | ||||||||||||||||||||||||||||||||   ||||||||| ||||||||||||||||| ||||||||||||||| |||||||| |    
T  37699249 attactcattctgattgctacttaaatgaatttgttatcttattatcacaacttgcaataagattccaactttagtgctaattacgttcgaaaagtcttg 37699150  T
Q  349 gtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatga 448  Q
    || ||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  37699149 gttttccaagatgttatttagtttaatgaacaccaaacttttctatgattgttactgaattaatattgttgccaaatgtcatatcagtatacggttatga 37699050  T
Q  449 aaagcacccccaaaacaaaataagggaatacgtagactcaa--tttgcaaacaatctaataagtcaacctttttgg 522  Q
    ||||||||||||| ||||||||||||||||| |||||||||  |||| |||||||||||||| |||| ||||||||    
T  37699049 aaagcacccccaacacaaaataagggaatacctagactcaatgtttgtaaacaatctaataactcaaactttttgg 37698974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 219 - 523
Target Start/End: Complemental strand, 37437823 - 37437520
Alignment:
Q  219 ttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttat---cacaacttgaaataagattc 315  Q
    ||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||   ||||||||| ||||||||||    
T  37437823 ttattttcttcatttcaggtgtatttttaagcaaattactcattctgattgctacttaaatgaatttgttatcttattatcacaacttgcaataagattc 37437724  T
Q  316 caactttcgtgctaattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatat 414  Q
    ||||||    ||||||||||||| |||||||| ||||||| || || |||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  37437723 caactt----gctaattacgttcgaaaagtcttggtcttccaatatgttatttagtttaatgaacaccaaacttttctatgattgttattgaattaatat 37437628  T
Q  415 tgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaac 514  Q
    ||||||||| |||||||||| |||| | |||||||||||| ||||| |  |||| |||||||||  |||||| |||||| ||||||||||||||||||      
T  37437627 tgttgccaattgtcatatcactatacggttatgaaaagca-ccccacattaaaacaagggaatagctagactgaatttgtaaacaatctaataagtcaga 37437529  T
Q  515 ctttttggt 523  Q
    |||||||||    
T  37437528 ctttttggt 37437520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 275 - 523
Target Start/End: Complemental strand, 37698864 - 37698636
Alignment:
Q  275 taaatgaatttgttatcttatcacaacttgaaataagattccaactttcgtgc----taattacgttcaaaaagtc-tggtcttcgaagatattatttag 369  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||    |||||||||| |||||||| |||||||| ||||| ||||||||    
T  37698864 taaatgaatttgttatcttatcacaacttgcaataagattccaactttagtgctaattaattacgttaaaaaagtcttggtcttccaagatgttatttag 37698765  T
Q  370 tttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaat 469  Q
    ||||| ||||||||||||||| |||||| |        |||||||||||||||| |||||||||| |||| | |                  ||||||||    
T  37698764 tttaacgaacaccaaacttttgtatgattg--------ttaatattgttgccaattgtcatatcactatacggt-----------------caacaaaat 37698690  T
Q  470 aagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt 523  Q
    |||||||||| ||||||||||||| ||||||||||||||||||| |||||||||    
T  37698689 aagggaatacttagactcaatttgtaaacaatctaataagtcaaactttttggt 37698636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 30384298 - 30384256
Alignment:
Q  59 taacttgttataattaaataacttaaatgacgtaagtgatacg 101  Q
    |||||||||| |||||||||||||||| ||||||||| |||||    
T  30384298 taacttgttacaattaaataacttaaaagacgtaagtaatacg 30384256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 1630012 - 1630048
Alignment:
Q  64 tgttataattaaataacttaaatgacgtaagtgatac 100  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  1630012 tgttatgattaaataacttaaaagacgtaagtgatac 1630048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 159 - 395
Target Start/End: Original strand, 16840857 - 16841109
Alignment:
Q  159 gctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaatgtt------attttcttcatttcaggtgtat----ttttaa 248  Q
    ||||||||||||||| | | |||| |||||||||||||||| ||||||||||| ||||||||      ||||||||||||||||||||||    ||||||    
T  16840857 gctctttaaagtatggatagttgacgaagtctaagtctccgcttctaaatacatttaatgttgttattattttcttcatttcaggtgtatatatttttaa 16840956  T
Q  249 gcacattactcactgtgattgctacttaaatgaatttgttatcttat------cacaacttgaaataagattccaactttcgtgctaattacgttcaaaa 342  Q
    ||| |||| ||| |||||||| |||||||||||||||||||||||||      ||||||||| ||||||||||||||||  |||||||||||||||||||    
T  16840957 gcaaattattcattgtgattggtacttaaatgaatttgttatcttattaatatcacaacttgcaataagattccaactta-gtgctaattacgttcaaaa 16841055  T
Q  343 agtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatg 395  Q
    ||||| ||||||| ||||| |||||||||||| | |||||||||||||| ||||    
T  16841056 agtcttggtcttccaagattttatttagtttattaaacaccaaacttttgtatg 16841109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 31095132 - 31095092
Alignment:
Q  59 taacttgttataattaaataacttaaatgacgtaagtgata 99  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  31095132 taacttgttataattaaataacttaaaggacgtaagtgata 31095092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 17411131 - 17411089
Alignment:
Q  57 actaacttgttataattaaataacttaaatgacgtaagtgata 99  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  17411131 actaacttgttacaattaaataacttaaatgacgtaagtgata 17411089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 196244 - 196287
Alignment:
Q  57 actaacttgttataattaaataacttaaatgacgtaagtgatac 100  Q
    ||||| || ||| |||||||||||||||||||||||||||||||    
T  196244 actaaattattacaattaaataacttaaatgacgtaagtgatac 196287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 18080645 - 18080600
Alignment:
Q  54 ataactaacttgttataattaaataacttaaatgacgtaagtgata 99  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||    
T  18080645 ataactaacttattacaattaaataacttaaatgacgtaagtgata 18080600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 44291420 - 44291463
Alignment:
Q  57 actaacttgttataattaaataacttaaatgacgtaagtgatac 100  Q
    |||||||||||| |||||||||||||||| ||| ||||||||||    
T  44291420 actaacttgttacaattaaataacttaaaggacataagtgatac 44291463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 100
Target Start/End: Original strand, 12422352 - 12422390
Alignment:
Q  62 cttgttataattaaataacttaaatgacgtaagtgatac 100  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  12422352 cttgttaaaattaaataacttaaaagacgtaagtgatac 12422390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 89
Target Start/End: Complemental strand, 32857837 - 32857805
Alignment:
Q  57 actaacttgttataattaaataacttaaatgac 89  Q
    |||||||||||| ||||||||||||||||||||    
T  32857837 actaacttgttacaattaaataacttaaatgac 32857805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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