View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19171_high_5 (Length: 428)
Name: NF19171_high_5
Description: NF19171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19171_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 70 - 150
Target Start/End: Original strand, 31698408 - 31698490
Alignment:
| Q |
70 |
caatcacatgtttaatttgaacatattttgaatatgtaaatgacaca--ttacatcagacaagaagttttacatcaatatagc |
150 |
Q |
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| T |
31698408 |
caatcacatgtttaatttgaacatattttgaatatgtaaatgacacattttatttcagacaagaagttttacatcaatatagc |
31698490 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 32630361 - 32630308
Alignment:
| Q |
261 |
aatctagtggttgggacacgcacattttaaatatggagaaatgaaaagttcgaa |
314 |
Q |
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| T |
32630361 |
aatctagtggttggaactcacacattataaatatggagaagtggaaagttcgaa |
32630308 |
T |
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