View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19171_high_7 (Length: 409)
Name: NF19171_high_7
Description: NF19171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19171_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 8921665 - 8921250
Alignment:
| Q |
1 |
tcaccaagcttaattgattcacgaaaattgctcattaaaattaaacaaccattccttattggctatcatatgattgttgcatcttgaatctaagaaccac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
8921665 |
tcaccaagcttaattgattcacgaaaattgctcatcaaaattaaacaaccattccttattggctatcatatgattgttgcatcctaaatctaagaaccac |
8921566 |
T |
|
| Q |
101 |
acctcatcttttgcaccggtgttagtattttcttcccaaataggacactcattttgatagtg------------acacttatagtattccaccatctctt |
188 |
Q |
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||||||||||||||||||||||||| ||||||||||||| | ||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
8921565 |
acctcatcttttgcaccggtgttagcattttcttcccaagtgggacacttattttgatagtgtcccaacttgtgacacttatagtattccaccatctctt |
8921466 |
T |
|
| Q |
189 |
tgctttgtcttcctcttccccttcccctt------------gctccatttcttcctctaccatgagtaaaaccaccatcttcagttcttcctcttcttga |
276 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
8921465 |
tgctttgtcttcatcttccccttccccttccccttccacttgctccatttcttcctctaccatgagtaaaaccaccatctccagctcttcctcttcttga |
8921366 |
T |
|
| Q |
277 |
atttgacaccttcaagagttgttcttcttcctttttcttgtgaagtgtcattcttgcttcttggacaagaaaattgctttgcagttcattaatggaaaaa |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8921365 |
atttgacaccttcaagagttgttcttcttcctttttcttgtgaagtgtcattcatgcttcttgaacaagaaaattgctttgcagttcattaatggaaaaa |
8921266 |
T |
|
| Q |
377 |
gtggtaacgtcattgg |
392 |
Q |
| |
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| |||||| ||||||| |
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| T |
8921265 |
gcggtaacatcattgg |
8921250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 7621929 - 7622157
Alignment:
| Q |
1 |
tcaccaagcttaattgattcacgaaaattgctcattaaaattaaacaaccattccttattggctatcatatgattgttgcatcttgaatctaagaaccac |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7621929 |
tcactaagcttaattgattcacgaaaattgctcatcaaaattaaacaaccattccttattggctatcatatgattgttgcatcctgaatctaagaaccac |
7622028 |
T |
|
| Q |
101 |
acctcatcttttgcaccggtgttagtattttcttcccaaataggacactcattttgata------------gtgacacttatagtattccaccatctctt |
188 |
Q |
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|||| |||||||||||||||||||| ||||||||||||| |||||||| |||||||||| ||||||||||||||| ||||||||||||| |
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| T |
7622029 |
accttatcttttgcaccggtgttagcattttcttcccaagtaggacacccattttgatagtgtcccaacttgtgacacttatagtactccaccatctctt |
7622128 |
T |
|
| Q |
189 |
tgctttgtcttcctcttccccttcccctt |
217 |
Q |
| |
|
| ||||||||||||||||||||||||||| |
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| T |
7622129 |
ttctttgtcttcctcttccccttcccctt |
7622157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 234 - 392
Target Start/End: Original strand, 7627363 - 7627521
Alignment:
| Q |
234 |
taccatgagtaaaaccaccatcttcagttcttcctcttcttgaatttgacaccttcaagagttgttcttcttcctttttcttgtgaagtgtcattcttgc |
333 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7627363 |
taccatgagtaaaaccaccatctccagttcttcctcttcttgaatttgacaccttcaagagttgttcttcttcctttttcttgtgaagtgtcattcttgc |
7627462 |
T |
|
| Q |
334 |
ttcttggacaagaaaattgctttgcagttcattaatggaaaaagtggtaacgtcattgg |
392 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
7627463 |
ttcttgaacaagaaaattgctttgcagttcattaatggaaaaagtggtaaggtcattgg |
7627521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 390
Target Start/End: Original strand, 35372092 - 35372158
Alignment:
| Q |
324 |
tcattcttgcttcttggacaagaaaattgctttgcagttcattaatggaaaaagtggtaacgtcatt |
390 |
Q |
| |
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|||||||||||||||| ||||| || ||| ||||||||||| ||| |||| ||||||||| ||||| |
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| T |
35372092 |
tcattcttgcttcttgcacaagtaatctgcattgcagttcatcaatagaaagagtggtaacatcatt |
35372158 |
T |
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