View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19171_high_8 (Length: 385)

Name: NF19171_high_8
Description: NF19171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19171_high_8
NF19171_high_8
[»] chr6 (3 HSPs)
chr6 (3-362)||(17075396-17075755)
chr6 (130-362)||(11053470-11053702)
chr6 (4-134)||(11064036-11064166)
[»] chr8 (2 HSPs)
chr8 (4-362)||(17683905-17684263)
chr8 (19-178)||(36159902-36160061)
[»] chr1 (1 HSPs)
chr1 (4-362)||(26741535-26741893)
[»] chr4 (2 HSPs)
chr4 (6-269)||(10559739-10560002)
chr4 (292-363)||(10558419-10558490)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 3 - 362
Target Start/End: Complemental strand, 17075755 - 17075396
Alignment:
Q  3 gacatcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctc 102  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||| ||| ||| |    
T  17075755 gacatcatcaaacacaaccttctcatttccatgcactgccacccaattaacccaatcattgttaacggaccccgatgacgaactaccatccgaagctccc 17075656  T
Q  103 gaagaaaccgccctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcagaacggtggcccggtctttgctgg 202  Q
    ||||||||| |  | |||||||||||||| || ||||| ||||||||||||||| ||||||||||||| ||||| | ||| | ||  || |||||||| |    
T  17075655 gaagaaaccacttttaccgcctttttaaggcgttccgagccttgtaattttctcaatttagattttaagatgtgtaaaactgaggaacgatctttgctag 17075556  T
Q  203 gcaaccgcgccaccttcttcaaactaaataccggatgccgcaaaattccattcactttcttcctctttataactattgaactggatttagcaaaaggccg 302  Q
    ||| |||||||||||| |||| |||||  ||||  || ||||||||||| ||||||||||||| |||  |||| || | ||||||||  ||||  |||||    
T  17075555 gcagccgcgccacctttttcagactaatcaccgagtgtcgcaaaattccgttcactttcttccgcttgttaacgatggtactggattgtgcaatgggccg 17075456  T
Q  303 caccactttcttaaccttctttcttgccgaagaaataacaccagcgactccatgatgatg 362  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| | |||| ||||||    
T  17075455 caccactttcttaaccttcttccttgccgaagaaataacaccagcgtcaccattatgatg 17075396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 130 - 362
Target Start/End: Complemental strand, 11053702 - 11053470
Alignment:
Q  130 agacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcagaacggtggcccggtctttgctgggcaaccgcgccaccttcttcaaactaa 229  Q
    ||||| || |||||||||||||| ||||||||||||||||| || || | || ||||| ||| |||||||| ||||||||||||||||| ||||||||||    
T  11053702 agacggtctgaaccttgtaatttcctcgatttagattttaagatatgtaaaatggtggaccgatctttgctaggcaaccgcgccacctttttcaaactaa 11053603  T
Q  230 ataccggatgccgcaaaattccattcactttcttcctctttataactattga-actggatttagcaaaaggccgcaccactttcttaaccttctttcttg 328  Q
      ||||  ||||||| ||  ||||||||||||||||  ||  |  | |  || || |||||  |||| ||||||||||||||||||||||||||||||||    
T  11053602 tcaccgagtgccgcagaaccccattcactttcttccgattgtttgc-acagataccggattgggcaataggccgcaccactttcttaaccttctttcttg 11053504  T
Q  329 ccgaagaaataacaccagcgactccatgatgatg 362  Q
    |||| ||||||||||||||| | |||||||||||    
T  11053503 ccgatgaaataacaccagcgtcaccatgatgatg 11053470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 11064166 - 11064036
Alignment:
Q  4 acatcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcg 103  Q
    |||||||||| ||| || ||||||||| ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| || || ||||||  ||    
T  11064166 acatcatcaaccactactttctcattctcatgcactgccacccaattgacccaatcattattaaccgatcccgacgaggaactaccttccgaaacttccg 11064067  T
Q  104 aagaaaccgccctaaccgcctttttaagacg 134  Q
    | |||||| || ||||| |||||||||||||    
T  11064066 aggaaaccaccttaaccacctttttaagacg 11064036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 4 - 362
Target Start/End: Original strand, 17683905 - 17684263
Alignment:
Q  4 acatcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcg 103  Q
    |||||||||| | | || ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| || || ||||||| ||    
T  17683905 acatcatcaaccgctactttctcattcccatgcactgccacccaattaacccaatcattattaaccgacctcgacgaggaactaccttccgaaactcccg 17684004  T
Q  104 aagaaaccgccctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcagaacggtggcccggtctttgctggg 203  Q
    | |||||| || | ||| ||||||||||||| || |||||||||||||| ||||||||||||||||| || || | |||||||| ||| |||||||| ||    
T  17684005 aggaaaccacctttaccacctttttaagacggtctgaaccttgtaatttcctcgatttagattttaagatatgtaaaacggtggaccgatctttgctagg 17684104  T
Q  204 caaccgcgccaccttcttcaaactaaataccggatgccgcaaaattccattcactttcttcc---tcttt--ataactattgaactggatttagcaaaag 298  Q
    |||| |||||||||| ||||||||||  ||||  ||||||||||  ||||||||||||||||   | |||  | || ||| | | ||||      || ||    
T  17684105 caactgcgccacctttttcaaactaatcaccgagtgccgcaaaaccccattcactttcttccgtttgtttgcacaaatatcggattgga-----aaatag 17684199  T
Q  299 gccgcaccactttcttaaccttctttcttgccgaagaaataacaccagcgactccatgatgatg 362  Q
    |||||||||||||| | ||||||||||||||||| ||||||||||||||| | |||||||||||    
T  17684200 gccgcaccactttcctgaccttctttcttgccgatgaaataacaccagcgtcaccatgatgatg 17684263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 36159902 - 36160061
Alignment:
Q  19 accttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgccctaa 118  Q
    ||||||||||||||||||||  ||||  ||||||||||||| |||||||| || |  || || |||||   ||||||| ||| ||||||  || || | |    
T  36159902 accttctcattcccatgcacaaccacaaaattaacccaatcgttgttaactgaacatgaagaagaacttttatctgaagctcccgaagaccccaccttca 36160001  T
Q  119 ccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgca 178  Q
    |||||||||| ||||||||||| || ||||||||||| | ||||||||||| ||||||||    
T  36160002 ccgcctttttcagacgatccgacccatgtaattttctagctttagattttagaatgtgca 36160061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 7e-68; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 4 - 362
Target Start/End: Original strand, 26741535 - 26741893
Alignment:
Q  4 acatcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcg 103  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||| || ||||| || ||||| ||||| ||| ||| ||    
T  26741535 acatcatcaaccacaaccttctcattcccatgcacttccacccaattaacccaatcgttgttaactgaacccgaggaagaactaccatccgaagctcccg 26741634  T
Q  104 aagaaaccgccctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcagaacggtggcccggtctttgctggg 203  Q
    |||||||| |||| || ||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||| | ||| ||||  || ||||||| |||    
T  26741635 aagaaaccacccttacagccttcttaagacgatccgatccttgtaattttctcgacttagattttaagatgtgtaaaactgtggaacgatctttgcaggg 26741734  T
Q  204 caaccgcgccaccttcttcaaactaaataccggatgccgcaaaattccattcactttcttcctctttataactattgaactggatttagcaaaaggccgc 303  Q
    || |||  ||||||| ||||||||||  ||||| | ||| || ||  ||||||||||||||| |||  |||| |  | ||  |||| ||||| |||| ||    
T  26741735 cagccgatccacctttttcaaactaatcaccgggttccgtaagatctcattcactttcttccgcttgttaacaaaggtacatgattgagcaataggctgc 26741834  T
Q  304 accactttcttaaccttctttcttgccgaagaaataacaccagcgactccatgatgatg 362  Q
     ||||| ||||||||||||| || ||||| ||||||||||||||  | |||||||||||    
T  26741835 gccactctcttaaccttcttcctagccgatgaaataacaccagcatcaccatgatgatg 26741893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 6 - 269
Target Start/End: Complemental strand, 10560002 - 10559739
Alignment:
Q  6 atcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaa 105  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||| || ||||| ||||||||| ||| ||||    
T  10560002 atcatcaactacaaccttctcattcccatgcactgccacccaattaacccaatcattgttatctgaacccgaggaagaactaccatctgaagctcccgaa 10559903  T
Q  106 gaaaccgccctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcagaacggtggcccggtctttgctgggca 205  Q
    |||||| || | ||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| | ||||||||   | |||||||| ||||    
T  10559902 gaaaccacctttaccgcctttttgagacgatctgatccttgtaattttctcgatttagattttaagatgtgtaaaacggtggattgatctttgctaggca 10559803  T
Q  206 accgcgccaccttcttcaaactaaataccggatgccgcaaaattccattcactttcttcctctt 269  Q
     | || ||||||| ||||||||||  ||||  ||||||| ||  ||||||||||||||||||||    
T  10559802 gctgccccacctttttcaaactaatcaccgagtgccgcagaaacccattcactttcttcctctt 10559739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 292 - 363
Target Start/End: Complemental strand, 10558490 - 10558419
Alignment:
Q  292 gcaaaaggccgcaccactttcttaaccttctttcttgccgaagaaataacaccagcgactccatgatgatgt 363  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  10558490 gcaataggccgcaccactttcttaaccttctttcttgccgaagaaataacaccagcgtcaccatgatgatgt 10558419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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