View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19172_high_5 (Length: 249)
Name: NF19172_high_5
Description: NF19172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19172_high_5 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 24204541 - 24204305
Alignment:
| Q |
13 |
aatataaatgcttacgaaatgagatggttaaaataagctctttcaaacactcccaagttaatttaaccataaaagaaaaaactaaagttggataagttgg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24204541 |
aatataaatgcttacgaaatgagatggttaaaataagctctttcaaacactcccaagttaatttaaccataaaagaaaaaactaaagttggataagttgg |
24204442 |
T |
|
| Q |
113 |
cctgtttttacctcctttggacggtcagaaaagacagtacacttgatcatgtttttgcaaactcttatttcttcttcttcttcaagttgctgtactacgg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24204441 |
cctgtttttacctcctttggacggtcagaaaagacagtacacttgatcatgtttttgcaaactcttatttcttcttcttcttcaagttgctgtactacgg |
24204342 |
T |
|
| Q |
213 |
tttctccagtttcagaattcagctcagcaatttggtt |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24204341 |
tttctccagtttcagaattcagctcagcaatttggtt |
24204305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 39 - 249
Target Start/End: Original strand, 29404188 - 29404392
Alignment:
| Q |
39 |
gttaaaataagctctttcaaacactcccaagttaatttaaccataaaagaaaaaactaaagttggataagttggcctgtttttacctcctttggacggtc |
138 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| || |||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29404188 |
gttaaaataagctctttcaaaccctcccaagttaatttaaccataaaagcaagaactgtagttggaaaagttggcctgtttttacctcctttggacggtc |
29404287 |
T |
|
| Q |
139 |
agaaaagacagtacacttgatcatgtttttgcaaactcttatttcttcttcttcttcaagttgctgtactacggtttctccagtttcagaattcagctca |
238 |
Q |
| |
|
|||| |||||||||||||||||||||| || ||||||||||| ||||||||||||||| |||||| | |||| || |||||||||||||||| |
|
|
| T |
29404288 |
agaacagacagtacacttgatcatgttcttacaaactcttat------ttcttcttcaagttgttgtactgcagtttttctgccttcagaattcagctca |
29404381 |
T |
|
| Q |
239 |
gcaatttggtt |
249 |
Q |
| |
|
||||||||||| |
|
|
| T |
29404382 |
gcaatttggtt |
29404392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 47 - 189
Target Start/End: Original strand, 36658406 - 36658551
Alignment:
| Q |
47 |
aagctctttcaaacactcccaagttaatttaac---cataaaagaaaaaactaaagttggataagttggcctgtttttacctcctttggacggtcagaaa |
143 |
Q |
| |
|
|||||||| |||||| || ||||||||||| || |||||||| || |||| |||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36658406 |
aagctcttccaaacaatctcaagttaatttgactaccataaaagtaagaactgtagttacataaattggcctgtttttacctcctttggacggtcagaac |
36658505 |
T |
|
| Q |
144 |
agacagtacacttgatcatgtttttgcaaactcttatttcttcttc |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36658506 |
agacagtacacttgatcatgtttttgcaaactctgatttcttcttc |
36658551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University