View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19172_low_1 (Length: 479)
Name: NF19172_low_1
Description: NF19172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19172_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 3 - 465
Target Start/End: Complemental strand, 44818238 - 44817770
Alignment:
| Q |
3 |
ctaaccaagaaaaaactgcgatcaaaccactgaaataatcagatcgtaaacaattttttattcatggtttaactatttggctaggtttgatttttaaaac |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44818238 |
ctaaccaagaaaaaactgcgatcaaaccactgaaataatcagatcgtaaacaattttttattcatggtttaactatttggctaggtttgatttttaaaac |
44818139 |
T |
|
| Q |
103 |
atcaagtaaattattcctcgtcttaaaataaggcaagaaag------ataagaaatgaaagcaaaccttgtagtatcatataatttgattgacaaacgga |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44818138 |
atcaagtaaattattcctcgtcttaaaataaggcaacaaagtaaaccataagaaatgaaagcaaaccttgtagtatcatataatttgattgacaaacgga |
44818039 |
T |
|
| Q |
197 |
actttgtgagactatgactatgaaagtggcattagaagcagcttgaggtcaacacaggaaggacctttcaaacacaaatgttatgggatcacctaatggt |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44818038 |
actttgtgagactatgactatgaaagtggcattagaagcagcttgaggtcaacacaggaaggacctttcaaacacaaatgttatgggatcacctaatggt |
44817939 |
T |
|
| Q |
297 |
caaaagaaagaaagcagctatgcaacatacgaatgatctaaatttgtagagtaacgttttgaagaaggatctatgaaattaaacttcacttatgcataag |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44817938 |
caaaagaaagaaagcagctatgcaacatacgaatgatctaaatttgtagagtaacgttttgaagaaggatctatgaaagtaaacttcacttatgcataag |
44817839 |
T |
|
| Q |
397 |
gatttttagcaataacttctaattttaggtgattcactgaaatggagcttagacttcctatgaaatata |
465 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44817838 |
gatttttagcaataacttctaattttaggtgattcactgaaatggagcttagacttcctatgaaatata |
44817770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University