View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19172_low_2 (Length: 391)
Name: NF19172_low_2
Description: NF19172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19172_low_2 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 5 - 391
Target Start/End: Complemental strand, 3112348 - 3111962
Alignment:
| Q |
5 |
gagcagcacagaagttcatttatattgagaatcaatattttcttggctcgtcatataactgggattctttcaaagacctcggtgagtattgagttctaaa |
104 |
Q |
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| T |
3112348 |
gagcagcacagaagttcatttatattgagaatcaatattttcttggctcgtcatataactgggattctttcaaagacctcggtgagtattgagttctaaa |
3112249 |
T |
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| Q |
105 |
accaataaaatgatactccatctgttccacaataatcgacatatctgactgtttcttacggattaagtaaagtgtgtaaatataagagtgaaaataataa |
204 |
Q |
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| T |
3112248 |
accaataaaatgatactccatctgttccacaataatcgacatatttgaccgtttcttacggattaagtaaagtgtgtaaatataagagtgaaaataataa |
3112149 |
T |
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| Q |
205 |
tacttttattgaattactcttatcaagcattaatgtatttaccctttaaatatattataatatataggttgcaacaggcatccttgttatattcattcct |
304 |
Q |
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| T |
3112148 |
tacttttattgaattactcttatcaagtattaatgtatttaccctttaaatatgttataatatataggttgcaacaggcatccttgttatattcattcct |
3112049 |
T |
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| Q |
305 |
tttcttttattcacaggtgcaaacaacttaattccgatggaaattgcgctaaaaatagccaacaaaatcaaacagaaagaaagattc |
391 |
Q |
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| T |
3112048 |
tttcttttattcacaggtgcaaacaacttaattccgattgaaattgcactaaaaatagccaacaaaatcaaacagaaagaaagattc |
3111962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 257 - 391
Target Start/End: Complemental strand, 3118580 - 3118447
Alignment:
| Q |
257 |
tattataatatataggttgcaacaggcatccttgttatattcattccttttcttttattcacaggtgcaaacaacttaattccgatggaaattgcgctaa |
356 |
Q |
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| T |
3118580 |
tattatactatataggttgcaacaagcatccttgttatattcattcctttgcttttata-acaggtgcaaacaatttaattccaatggaaattgctctaa |
3118482 |
T |
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| Q |
357 |
aaatagccaacaaaatcaaacagaaagaaagattc |
391 |
Q |
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| T |
3118481 |
agatagcaaacaaaatcaaacacaaagagagattc |
3118447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 3118775 - 3118683
Alignment:
| Q |
5 |
gagcagcacagaagttcatttatattgagaatcaatattttcttggctcgtcatataactgggattctttcaaagacctcggtgagtattgag |
97 |
Q |
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| T |
3118775 |
gagcagcacaaaagttcatttatattgagaatcaatattttcttggctcatcatataattgggattcttacaaagacctcggtgagtattgag |
3118683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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