View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19172_low_6 (Length: 239)
Name: NF19172_low_6
Description: NF19172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19172_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 24204011 - 24204231
Alignment:
| Q |
19 |
gctgagaaggagttgaaattgctcatgtctgttgcttcagcttcagagaaggatttggatagtgaaaggtatttttctcttagtcattcgatcaagtctg |
118 |
Q |
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| T |
24204011 |
gctgagaaggagttgaaattgctcatgtctgttgcttcagcttcagagaaggatttggatagcaaaaggtatttttctcttagtcagtcgatcaagtctg |
24204110 |
T |
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| Q |
119 |
gatccagaacaaatttttaaacagaaatattcacatcagggttcaaacacgagatgtgattgataatatgattgacttttaaaaatgattatctcgtatg |
218 |
Q |
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| T |
24204111 |
gatccagaacaaatttttaaacagaaatattcacatcagggttcaaacacgagatgtgattgataatatgattgactttgaaaaatgattatctcgtatg |
24204210 |
T |
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| Q |
219 |
aaatgccctctcaattggctc |
239 |
Q |
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| T |
24204211 |
aaatgccctctcaattggctc |
24204231 |
T |
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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 36659425 - 36659350
Alignment:
| Q |
67 |
aaggatttggatagtgaaaggtatttttctct--tagtcattcgatcaagtctggatccagaacaaatttttaaac |
140 |
Q |
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| T |
36659425 |
aaggaattggatagtgaaaggtatttttctctcttaatcattcaatcaagtctggatccggaacagatttttaaac |
36659350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 36659515 - 36659466
Alignment:
| Q |
19 |
gctgagaaggagttgaaattgctcatgtctgttgcttcagcttcagagaa |
68 |
Q |
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| T |
36659515 |
gctgagaaggagttgaagttgctcaagtctgttgcttcagcttcagagaa |
36659466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 161
Target Start/End: Complemental strand, 29405116 - 29405020
Alignment:
| Q |
67 |
aaggatttggatagtgaaaggtatttttctct--tagtcattcgatcaagtctggatccagaacaaatttttaaacagaaatattcacatcagggtt |
161 |
Q |
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| T |
29405116 |
aaggaattggacagtgaaaggtatttttctctcttagtcattcaatcaagttatgatcgggaacatatttttaaatagaagtattcacatcagggtt |
29405020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 29405206 - 29405157
Alignment:
| Q |
19 |
gctgagaaggagttgaaattgctcatgtctgttgcttcagcttcagagaa |
68 |
Q |
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| T |
29405206 |
gctgagaaggagttgaagttgctcaagtctgttgcttcagcttcagagaa |
29405157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 29404515 - 29404466
Alignment:
| Q |
190 |
ttgacttttaaaaatgattatctcgtatgaaatgccctctcaattggctc |
239 |
Q |
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| T |
29404515 |
ttgactttggaaaatgattatctcgaatgaaatgccctctaagttggctc |
29404466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 26955114 - 26955162
Alignment:
| Q |
20 |
ctgagaaggagttgaaattgctcatgtctgttgcttcagcttcagagaa |
68 |
Q |
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| T |
26955114 |
ctgagaaggagttgaagttgctcaagtctgttgcttcagcttcagagaa |
26955162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 26955209 - 26955279
Alignment:
| Q |
73 |
ttggatagtgaaaggtatttttctc--ttagtcattcgatcaagtctggatccagaacaaatttttaaaca |
141 |
Q |
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| T |
26955209 |
ttggatagtgaaagttatttttctctcttagtcattcaatcaagtctggatccggagcagatttttaaaca |
26955279 |
T |
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