View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19172_low_7 (Length: 232)
Name: NF19172_low_7
Description: NF19172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19172_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 1616340 - 1616124
Alignment:
| Q |
1 |
tttttaattaagcattaagtaattcaataaaaacgtatcattcatcataaataatcaaatcaacgagtcctttagggactttccgataaataaattcata |
100 |
Q |
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| T |
1616340 |
tttttaattaagcattaagtaattcaataaaaacgtatcattcatcataaataatcaaatcaatgagtcctttagggactttccgataaataaattcata |
1616241 |
T |
|
| Q |
101 |
aatactaaatatgagggcatttattcagaaacagtataaaaactgatctttataaacaaatactaaatattaaaaaactacaatcattaaaggatgtcat |
200 |
Q |
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| T |
1616240 |
aatactaaatatgagggcatttattcaaaaacagtataaaaactgatctttataaacaaatactaaatattaaaaaactacaatcattaaaggatgtcat |
1616141 |
T |
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| Q |
201 |
ttatttatttattcatg |
217 |
Q |
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||||||||||||||||| |
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| T |
1616140 |
ttatttatttattcatg |
1616124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 40050596 - 40050698
Alignment:
| Q |
2 |
ttttaattaagcattaagtaattcaataaaaacgtatcattcatcataaataatcaaatcaacgagtcctttagggactttccgataaataaattcataa |
101 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| || ||||||| |||||| |||||||||||||||||| |
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| T |
40050596 |
ttttaattaagcattaattaattcaataaaaacgtatcattcttcataaataatcaaatcaatgaatcctttaacgacttttcgataaataaattcataa |
40050695 |
T |
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| Q |
102 |
ata |
104 |
Q |
| |
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||| |
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| T |
40050696 |
ata |
40050698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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