View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19173_low_1 (Length: 547)
Name: NF19173_low_1
Description: NF19173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19173_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 40 - 528
Target Start/End: Complemental strand, 41981601 - 41981116
Alignment:
| Q |
40 |
catctttttcctctggtaactactactctaccgaatacttttgtatgttcggtatcaggtgagtttgtcgaaatatacgtaagtgactcatatcatcttg |
139 |
Q |
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| T |
41981601 |
catcttttccctttggtaactactactctaccgagtacttttgtatgttcgatatcaaatgagtttatcgaaatatacgtaagtgagtcataccatcttg |
41981502 |
T |
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| Q |
140 |
caaaagatacaaaatgaacttttgcaaaatgaaattccacaccaactcatcgtaatttcgacaaacttatcgaagaaacacnnnnnnnnnnnaaattact |
239 |
Q |
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| T |
41981501 |
caaaa-atacaaaatgaacttttgcaaaatgaaattcgacaccaactcatcgtaatttcgacaaacttatcaaagaaacattttttttttt--aattact |
41981405 |
T |
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| Q |
240 |
attaactatttccattcaaaatattttcaggtaacttgtcctcataccacattaactgcggcacttcaacaaacataacagaccccttcaatacaacatg |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41981404 |
attaactatttccattcaaaatattttcaggtaacttgtcctcataccacattaactgcggcacttcaacaaacataacagaccccttcaatacaacatg |
41981305 |
T |
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| Q |
340 |
gctctccgaccgttactacaccggcggcgccaccaccaccgtctcggagccactccgcttcaacctcccctcagaaaaaaccctccgcttcttcccttcc |
439 |
Q |
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| T |
41981304 |
gctctccgaccgttactacaccggcggggccaccaccaccgtctcggagccactccgcttcaacctcccctcagaaaaaaccctccgcttcttcccttcc |
41981205 |
T |
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| Q |
440 |
tcctcctccggcnnnnnnnnctgctactccttcccttcacttccctccgcccgctacctcctccgcaccttcaccgtctatgacaacta |
528 |
Q |
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| T |
41981204 |
tcctcctccggcaaaaaaaactgctactccttcccttcacttccctccgcccgctacctcctccgcaccttcaccgtctacgacaacta |
41981116 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 284 - 373
Target Start/End: Original strand, 22083498 - 22083587
Alignment:
| Q |
284 |
taccacattaactgcggcacttcaacaaacataacagaccccttcaatacaacatggctctccgaccgttactacaccggcggcgccacc |
373 |
Q |
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||||||||| ||||||||||| |||| |||| || ||| | ||||| || || |||||||||||||||| || |||||||||| ||||| |
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| T |
22083498 |
taccacattgactgcggcactccaactaacaccaccgactcattcaacactacttggctctccgaccgtttcttcaccggcggcaccacc |
22083587 |
T |
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