View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19173_low_2 (Length: 476)
Name: NF19173_low_2
Description: NF19173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19173_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 5 - 461
Target Start/End: Original strand, 49134207 - 49134663
Alignment:
| Q |
5 |
gagaagcaaagggagaaattaagaagtggggttgaggaaggaatgagataagaagcattgagctgctctcaacagaaaggagcagtgttgttgaggtgaa |
104 |
Q |
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| T |
49134207 |
gagaagcaaagagagaaattaagaagtggggttgaggaaggaatgagataagaagcattgagctgctctcaacagaaaggagcagtgttgttgaggtgaa |
49134306 |
T |
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| Q |
105 |
ggacgagggagaggctggggaaggggaagaaaatggaaattcggtgt-agatgacgtatcatgacatttggtggatctctttgatgtaatgatgacaaat |
203 |
Q |
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| T |
49134307 |
ggacgagggagaggctggggaaggggaagaaaatggaaattcggtgtaagatgacttatcatgacatttggtggatctctttgatgt-atgatgacaaat |
49134405 |
T |
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| Q |
204 |
tatattgaacaccatataaacacttcagtgtggaaggtgatattttttatgtattaatttggcactttggttctttggctagtttggaaggcgaggaatg |
303 |
Q |
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| T |
49134406 |
tatattgaacaccatataaacacttcagtgtggaaggtgattttttttgtgtattaatttggcactttggttttttggctagtttggaaggcgaggaatg |
49134505 |
T |
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| Q |
304 |
aacnnnnnnnntctgataaaactccaaaggtgatggaaatcgtagacgacattaaaatgttatcttaaagttggttcttgaatagacattttagtccacc |
403 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
49134506 |
aacaaaaaaaatctgataaaactccaaaggtgatggaaatcgtagacgacattaaaatgttatcttaaagttggttcttgaatagacattttggtccacc |
49134605 |
T |
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| Q |
404 |
ttatatttattataaatagaattcatgatcatttttgtagtgttaaggtgattctttt |
461 |
Q |
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| T |
49134606 |
ttatatttattataaatagaattcatgatcatttttgtagtgttgaggtgattctttt |
49134663 |
T |
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