View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19173_low_6 (Length: 320)
Name: NF19173_low_6
Description: NF19173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19173_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 51 - 233
Target Start/End: Original strand, 18716976 - 18717158
Alignment:
| Q |
51 |
cctctcaaaaataaagttttattgatttttgttactgttttacacaggtgcctatataagattctttttattaatgttattgtataaagggcaaccaaag |
150 |
Q |
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| T |
18716976 |
cctctcaaaaataaagttttattgatttttgttactgtttta-acaggtgcctatataagattctttttgttaatgtttttgtataaagggcaaccaaag |
18717074 |
T |
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| Q |
151 |
tgtgggccagtttcttgaaaatgtcactttcaatgattaagacaccatat-aaaaaattaaactttttatgtattttcggtatt |
233 |
Q |
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| T |
18717075 |
tgtgggccagtttcttgaaaatgtcactttcaatgattaagacaccatataaaaaaattaaacttttaatgtattttcggtatt |
18717158 |
T |
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