View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19173_low_7 (Length: 294)
Name: NF19173_low_7
Description: NF19173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19173_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 30099760 - 30100027
Alignment:
| Q |
17 |
aagagcaataacaatcctacatcaagcatcaaatttcaacaaacatttgtaggaacaaagccggcaccagctgcagcatattactcatcaagaggtcctt |
116 |
Q |
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| T |
30099760 |
aagagcaataacaatcctacatcaagcatcaaatttcaacaaacatttgtaggaacaaagccggcaccagctgcagcatattactcatcaagaggtcctt |
30099859 |
T |
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| Q |
117 |
cacatagctatccatggattttgaaacctgatataatggcacctggatcaagagttcttgcagcttatattcctaacaagccaacagctagaattggcac |
216 |
Q |
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| T |
30099860 |
cacatagctatccatggattttgaaacctgatataatggcacctggatcaagagttcttgcagcttatattcctaacaaaccaacagctagaattggcac |
30099959 |
T |
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| Q |
217 |
aaatgtgttcttatcaagtgactacaatttcatgtcaggaacatccatgtcttgtcctcatgtctctg |
284 |
Q |
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| T |
30099960 |
aaatgtgttcttatcaagtgactacaatttcatgtcaggaacatccatgtcttgtcctcatgtttctg |
30100027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 29 - 284
Target Start/End: Complemental strand, 30091144 - 30090889
Alignment:
| Q |
29 |
aatcctacatcaagcatcaaatttcaacaaacatttgtaggaacaaagccggcaccagctgcagcatattactcatcaagaggtccttcacatagctatc |
128 |
Q |
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| T |
30091144 |
aatccaacagcaagcattaagtttcaacaaacatttcttggaataaaaccggcaccaattgcagctcattactcatcaagaggtccatcacatggctttc |
30091045 |
T |
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| Q |
129 |
catggattttgaaacctgatataatggcacctggatcaagagttcttgcagcttatattcctaacaagccaacagctagaattggcacaaatgtgttctt |
228 |
Q |
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| T |
30091044 |
cttggattttgaagcctgacataatggcacctggatcaagagttctcgctgcttttgttccttataaaccaacagctagaattggtaccgatgtgttctt |
30090945 |
T |
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| Q |
229 |
atcaagtgactacaatttcatgtcaggaacatccatgtcttgtcctcatgtctctg |
284 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
30090944 |
atcaagtgactacaatttcatgtcaggaacatccatggcttgtcctcatgcctctg |
30090889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 162
Target Start/End: Complemental strand, 35170858 - 35170737
Alignment:
| Q |
41 |
agcatcaaatttcaacaaacatttgtaggaacaaagccggcaccagctgcagcatattactcatcaagaggtccttcacatagctatccatggattttga |
140 |
Q |
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|||||||| |||| ||||||||| || ||||||||||| ||||||||||| || |||||| ||||||||||||||| | ||||||||| | || || | |
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| T |
35170858 |
agcatcaattttcgacaaacattcgttggaacaaagccagcaccagctgctgcttattacagttcaagaggtccttcaaaaagctatccaagaatcttaa |
35170759 |
T |
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| Q |
141 |
aacctgatataatggcacctgg |
162 |
Q |
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| T |
35170758 |
agcctgacattatggcacctgg |
35170737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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