View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19174_high_3 (Length: 464)
Name: NF19174_high_3
Description: NF19174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19174_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 9995662 - 9995344
Alignment:
| Q |
1 |
ccacaccgtgtccaggaatgaatctagtattttcttcggtgtacacgagtttcgttctgaagcctgaaacaaatataatgttggtgtcgatgtcctaaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9995662 |
ccacaccgtgtccaggaatgaatctagtattttcttcggtgtatacgagttttgttctgaagcctgaaacaaatataatgttggtgtcgatgtcctaaac |
9995563 |
T |
|
| Q |
101 |
atttaagtgagttagaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattctacttacattcgcgaaagagtcttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| |
|
|
| T |
9995562 |
atttaagtgagttagaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattgtacttacattcacgaaagcgtcttg |
9995463 |
T |
|
| Q |
201 |
ttcatggtggtagatgaatggaaccagtcaccagttagatagagcaattctccatttattc-nnnnnnnnattcttttgtccatttcctcggaacaaatg |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9995462 |
ttcatggtggtagatgaatggaaccagtcaccagttagatagagcaattctccatttattctttttttttattcttttgtccatttcctcggaacaaatg |
9995363 |
T |
|
| Q |
300 |
aattatggttggtctgaag |
318 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
9995362 |
aattatggttggtctgaag |
9995344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 10358887 - 10359207
Alignment:
| Q |
1 |
ccacaccgtgtccaggaatgaatctagtattttcttcggtgtacacgagtttcgttctgaagcctgaaacaaatataatgttggtgtcgatgtcctaaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10358887 |
ccacaccgtgtccaggaatgaatctagtattttcttcggtgtacacgagtttcgttctgaagcctgaaacaaatataatgttggtgtcgatgtcctaaac |
10358986 |
T |
|
| Q |
101 |
atttaagtgagttagaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattctacttacattcgcgaaagagtcttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10358987 |
atttaagtgagttagaatgttgatatcatagtcagagttcttcattgaaatgtaaattacgaaaaagaaatattgtacttacattcgcgaaagagtcttg |
10359086 |
T |
|
| Q |
201 |
ttcatggtggtagatgaatggaaccagtcaccagttagatagagcaattctccatttattc--nnnnnnnnattcttttgtccatttcctcggaac-aaa |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
10359087 |
ttcatggtggtagatgaatggaaccagtcaccagttagatacagcaattctccatttattcttttttttttattcttttgtccatttcctcggaacaaaa |
10359186 |
T |
|
| Q |
298 |
tgaattatggttggtctgaag |
318 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
10359187 |
tgaattatggttggtctgaag |
10359207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 48388051 - 48388366
Alignment:
| Q |
1 |
ccacaccgtgtccaggaatgaatctagtattttcttcggtgtacac--gagtttcgttctgaagcctgaaacaaatataatgttggtgtcgatgtcctaa |
98 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||||||||||||||||| | |||||||| | ||| || |
|
|
| T |
48388051 |
ccacaccgtgtccaggaatgaatctagcattttcttcagtgtacacatgagtttcattctgaagcctgaaacaaataagcttttggtgtcaagttccaaa |
48388150 |
T |
|
| Q |
99 |
acatttaagtgagttagaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattctacttacattcgcgaaagagtct |
198 |
Q |
| |
|
||||| ||||| ||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||| ||||||| | |||||||||||| |
|
|
| T |
48388151 |
acatt----tgagtgagaatgttgatatcataatcagagttcttcattgaaatgtgaattgcaaaaaagaaatattgtacttacgattgcgaaagagtct |
48388246 |
T |
|
| Q |
199 |
tgttcatggtggtagatgaatggaaccagtcaccagttagatagagcaattctccatttattcnnnnnnnnattcttttgtccatttcctcggaacaaat |
298 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||| |
|
|
| T |
48388247 |
tgttcatggtggtagatgagtggaaccagtcaccagttagatagagcaattctccatttattctttctttgattcttttgtccatttcctcagaaccaat |
48388346 |
T |
|
| Q |
299 |
gaattatggttggtctgaag |
318 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
48388347 |
gaataatggttggtctgaag |
48388366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 114 - 318
Target Start/End: Complemental strand, 10216733 - 10216529
Alignment:
| Q |
114 |
agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattctacttacattcgcgaaagagtcttgttcatggtggtag |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10216733 |
agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattgtacttacattcgcgaaagagtattgttcatggtggtag |
10216634 |
T |
|
| Q |
214 |
atgaatggaaccagtcaccagttagatagagcaattctccatttattcnnnnnnnnattcttttgtccatttcctcggaacaaatgaattatggttggtc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10216633 |
atgaatggaaccagtcaccagttagatagagcaattctccatttattcttttttttattcttttgtccatttcctcggaacaaatgaattatggttggtc |
10216534 |
T |
|
| Q |
314 |
tgaag |
318 |
Q |
| |
|
||||| |
|
|
| T |
10216533 |
tgaag |
10216529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 114 - 318
Target Start/End: Complemental strand, 10105585 - 10105381
Alignment:
| Q |
114 |
agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattctacttacattcgcgaaagagtcttgttcatggtggtag |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10105585 |
agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattgtacttacattcgcgaaagagtattgttcatggtggtag |
10105486 |
T |
|
| Q |
214 |
atgaatggaaccagtcaccagttagatagagcaattctccatttattcnnnnnnnnattcttttgtccatttcctcggaacaaatgaattatggttggtc |
313 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10105485 |
atgaatgaaaccagtcaccagttagatagagcaattctccatttattcttttttttattcttttgtccatttcctcggaacaaatgaattatggttggtc |
10105386 |
T |
|
| Q |
314 |
tgaag |
318 |
Q |
| |
|
||||| |
|
|
| T |
10105385 |
tgaag |
10105381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 114 - 318
Target Start/End: Complemental strand, 10226345 - 10226141
Alignment:
| Q |
114 |
agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattctacttacattcgcgaaagagtcttgttcatggtggtag |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10226345 |
agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgtgaaaaagaaatgttgtacttacattcgcgaaagagtattgttcatggtggtag |
10226246 |
T |
|
| Q |
214 |
atgaatggaaccagtcaccagttagatagagcaattctccatttattcnnnnnnnnattcttttgtccatttcctcggaacaaatgaattatggttggtc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10226245 |
atgaatggaaccagtcaccagttagatagagcaattctccatttattcttttttttattcttttgtccatttcctcggaacaaatgaattatggttggtc |
10226146 |
T |
|
| Q |
314 |
tgaag |
318 |
Q |
| |
|
||||| |
|
|
| T |
10226145 |
tgaag |
10226141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 114 - 318
Target Start/End: Complemental strand, 10220252 - 10220046
Alignment:
| Q |
114 |
agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaa-gaaatattctacttacattcgcgaaagagtcttgttcatggtggta |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
10220252 |
agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaaagaaatattgtactgacattcgcgaaagagtattgttcatggtggta |
10220153 |
T |
|
| Q |
213 |
gatgaatggaaccagtcaccagttagatagagcaattctcca-tttattcnnnnnnnnattcttttgtccatttcctcggaacaaatgaattatggttgg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10220152 |
gatgaatggaaccagtcaccagttagatagagcaattctccatttttttattttttttattcttttgtccatttcctcggaacaaatgaattatggttgg |
10220053 |
T |
|
| Q |
312 |
tctgaag |
318 |
Q |
| |
|
||||||| |
|
|
| T |
10220052 |
tctgaag |
10220046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 10131335 - 10131188
Alignment:
| Q |
1 |
ccacaccgtgtccaggaatgaatctagtattttcttcggtgtacacgagtttcgttctgaagcctgaaacaaatataatgttggtgtcgatgtcctaaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10131335 |
ccacaccgtgtccaggaatgaatctagtattttcttcggtgtacacgagtttcgttatgaagcctgaaacaaatataatgttggtgtcgatgttctaaac |
10131236 |
T |
|
| Q |
101 |
atttaagtgagttagaatgttgatatcatagtcagagttcttcattga |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10131235 |
atttaagtgagttagaatgttgatatcatagtcagagttcttcattga |
10131188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 316 - 372
Target Start/End: Complemental strand, 9995313 - 9995257
Alignment:
| Q |
316 |
aagtacttgttgtaaaaaatagttgatgacaactgagttatactacaacacaaacaa |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9995313 |
aagtacttgttgtaaaaaatagttgatgacaagtgagttatactacaacacaaacaa |
9995257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 400 - 450
Target Start/End: Complemental strand, 9995227 - 9995177
Alignment:
| Q |
400 |
attaccaaaacccatccccaagtatcagcaaaagatggtacatgagttgtg |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9995227 |
attaccaaaacccatccccaagtatcagcaaaagatggtacatgagttgtg |
9995177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 400 - 450
Target Start/End: Original strand, 10359319 - 10359369
Alignment:
| Q |
400 |
attaccaaaacccatccccaagtatcagcaaaagatggtacatgagttgtg |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10359319 |
attaccaaaacccatccccaagtatcagcaaaagatggtacatgagttgtg |
10359369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 401 - 450
Target Start/End: Original strand, 48388469 - 48388518
Alignment:
| Q |
401 |
ttaccaaaacccatccccaagtatcagcaaaagatggtacatgagttgtg |
450 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48388469 |
ttaccataacccatccccaagtatcagcaaaagatggtacatgagttgtg |
48388518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 325 - 372
Target Start/End: Original strand, 10359244 - 10359291
Alignment:
| Q |
325 |
ttgtaaaaaatagttgatgacaactgagttatactacaacacaaacaa |
372 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10359244 |
ttgtaaaaaatagttgatgataactgagttatactacaacacaaacaa |
10359291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 114 - 318
Target Start/End: Complemental strand, 26796204 - 26796000
Alignment:
| Q |
114 |
agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattctacttacattcgcgaaagagtcttgttcatggtggtag |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26796204 |
agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattgtacttacattcgcgaaagagtattgttcatggtggtag |
26796105 |
T |
|
| Q |
214 |
atgaatggaaccagtcaccagttagatagagcaattctccatttattcnnnnnnnnattcttttgtccatttcctcggaacaaatgaattatggttggtc |
313 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26796104 |
atgaatgaaaccagtcaccagttagatagagcaattctccatttattcttttttttattcttttgtccatttcctcggaacaaatgaattatggttggtc |
26796005 |
T |
|
| Q |
314 |
tgaag |
318 |
Q |
| |
|
||||| |
|
|
| T |
26796004 |
tgaag |
26796000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 114 - 318
Target Start/End: Complemental strand, 26799722 - 26799517
Alignment:
| Q |
114 |
agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattctacttacattcgcgaaagagtcttgttcatggtggtag |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26799722 |
agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaagaaatattgtacttacattcgcgaaagagtattgttcatggtggtag |
26799623 |
T |
|
| Q |
214 |
atgaatggaaccagtcaccagttagatagagcaattctcca-tttattcnnnnnnnnattcttttgtccatttcctcggaacaaatgaattatggttggt |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26799622 |
atgaatggaaccagtcaccagttagatagagcaattctccatttttttattttttttattcttttgtccatttcctcggaacaaatgaattatggttggt |
26799523 |
T |
|
| Q |
313 |
ctgaag |
318 |
Q |
| |
|
|||||| |
|
|
| T |
26799522 |
ctgaag |
26799517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 114 - 318
Target Start/End: Complemental strand, 26807272 - 26807066
Alignment:
| Q |
114 |
agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaa-gaaatattctacttacattcgcgaaagagtcttgttcatggtggta |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
26807272 |
agaatgttgatatcatagtcagagttcttcattgaaatgtaaattgcgaaaaaagaaatattgtactgacattcgcgaaagagtattgttcatggtggta |
26807173 |
T |
|
| Q |
213 |
gatgaatggaaccagtcaccagttagatagagcaattctcca-tttattcnnnnnnnnattcttttgtccatttcctcggaacaaatgaattatggttgg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26807172 |
gatgaatggaaccagtcaccagttagatagagcaattctccatttttttattttttttattcttttgtccatttcctcggaacaaatgaattatggttgg |
26807073 |
T |
|
| Q |
312 |
tctgaag |
318 |
Q |
| |
|
||||||| |
|
|
| T |
26807072 |
tctgaag |
26807066 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 3765792 - 3765878
Alignment:
| Q |
201 |
ttcatggtggtagatgaatggaaccagtcaccagttagatagagcaattctccatttattcnnnnnnnnattcttttgtccatttcc |
287 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||| ||| |||||||||| ||| ||||||| |||||||||||||||||| |
|
|
| T |
3765792 |
ttcatgatggtagatgaatggaaccaagcaccatctaggtagagcaattttccttttattctttcttcaattcttttgtccatttcc |
3765878 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 446
Target Start/End: Original strand, 3765997 - 3766041
Alignment:
| Q |
402 |
taccaaaacccatccccaagtatcagcaaaagatggtacatgagt |
446 |
Q |
| |
|
||||| |||||||||||| | ||||||||| |||||||||||||| |
|
|
| T |
3765997 |
taccataacccatccccatgaatcagcaaatgatggtacatgagt |
3766041 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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