View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19174_low_1 (Length: 711)
Name: NF19174_low_1
Description: NF19174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19174_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 182 - 694
Target Start/End: Original strand, 1172504 - 1173002
Alignment:
| Q |
182 |
aaacaatgtccagacacagaacctgcaaaatagattttgaactttagtcattggtagggtttagggtttaggaaagggagttatataaagggtgagacga |
281 |
Q |
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| T |
1172504 |
aaacaatgtccagacacagaacctgcaaaatagattttgaactttagtcattggtagggtttagggttttggaaagggagttatataaagggtgagatga |
1172603 |
T |
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| Q |
282 |
gaattgagaatctaaagtgtacacataaaaactggtccaattaatgacaacctattacacaatggattagcaaatcaacttgatattaaaattaatatta |
381 |
Q |
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| T |
1172604 |
gaattgagagtctaaagtgtacccctaaaaactggtccaattaatgacaacctattacacaatggattagcaaatcaacttgatattaaaattaatatta |
1172703 |
T |
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| Q |
382 |
ggaattgaacatgttgaaacatcaatcataaataaggcattctgacttacttaggcacatgcatgaacaaacaaacaataaattcgatagcgataatata |
481 |
Q |
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| T |
1172704 |
agaatcgaaca---------aacaaaca---ataa---attc-gacttacttaggcacatgcatgaacaaacaaacaataaattcgatagcgataatata |
1172787 |
T |
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| Q |
482 |
tatacatgctgaaattaatattaagagtttaatatgcatacctgaaagtgagaaacttgaaacaaagtgaagaattctgaataacaagcaaacgacgatt |
581 |
Q |
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| T |
1172788 |
tatacatgctgaaattaatattaagagtttaatatgcatacctgaaagtgagaaacttgaaacaaagtgaagaattgtgaataacaagcaaacgacgatt |
1172887 |
T |
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| Q |
582 |
ataactctcaatatcgattgactctttttgtttccctcaagaagatgtatgtattccttc--aagtagggttgaggtatttatatgaagtgttaccaaag |
679 |
Q |
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| T |
1172888 |
ataactctcaatatcgactgactctttttgtttccctcaagaacatttatgtattcgttcttaagtagggttgaggtatttatatgaagtgttaccaaag |
1172987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 22 - 184
Target Start/End: Original strand, 1172317 - 1172479
Alignment:
| Q |
22 |
aatccacctccctttcttataggaagagatagttcatgtttgtgatcattccgactttccatgaacccatcgttttggttcaaagcttgagcacttgaga |
121 |
Q |
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| T |
1172317 |
aatccacctccctttcttatagtaagagatagttcatgtttgtgatcattccgactttccacgaacccatcgttttggttcaaagcttgagcacttgaga |
1172416 |
T |
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| Q |
122 |
tcatcaataggaagagtacagaaagtattatcttcatgctaggcctaagggattctttgcaaa |
184 |
Q |
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| T |
1172417 |
tcatcaataggaagagtacagaaagtattatcttcatgctaggcctaagggattctttgcaaa |
1172479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 28 - 167
Target Start/End: Original strand, 1164965 - 1165104
Alignment:
| Q |
28 |
cctccctttcttataggaagagatagttcatgtttgtgatcattccgactttccatgaacccatcgttttggttcaaagcttgagcacttgagatcatca |
127 |
Q |
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| T |
1164965 |
cctccctttcttatagtatgggatagttcatgtttgtgatcattccgactttccgcgaacccatcatggtggttcaaagcttgagcacttgagatcatca |
1165064 |
T |
|
| Q |
128 |
ataggaagagtacagaaagtattatcttcatgctaggcct |
167 |
Q |
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| T |
1165065 |
atatgaacagtacagaaagtattaccttcatggtaggcct |
1165104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 250 - 365
Target Start/End: Original strand, 1181795 - 1181907
Alignment:
| Q |
250 |
taggaaagggagttatataaagggtgagacgagaattgagaatctaaagtgtacacataaaaactggtccaattaatgacaacctattac-acaatggat |
348 |
Q |
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| T |
1181795 |
taggaaagggagatatataaaaggtgagaagagaactgagaatctaatgtggagccctaaaaacgggtcc----aatgacgacctattactacaatggat |
1181890 |
T |
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| Q |
349 |
tagcaaatcaacttgat |
365 |
Q |
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| T |
1181891 |
tagcaaatcaacttgat |
1181907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 433 - 476
Target Start/End: Original strand, 1182388 - 1182431
Alignment:
| Q |
433 |
taggcacatgcatgaacaaacaaacaataaattcgatagcgata |
476 |
Q |
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| T |
1182388 |
taggcacatgcatgaacaaacaaacaataaattcgatagcgata |
1182431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 1160311 - 1160387
Alignment:
| Q |
28 |
cctccctttcttataggaagagatagttcatgtttgtgatcattccgactttccatgaacccatcgttttggttcaa |
104 |
Q |
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| T |
1160311 |
cctccctttcttatagtaacagatagttcatgtttgtgtgcattttgactttccacaaacccatctttgtggttcaa |
1160387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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